eco_20184 Co-expression
Genes in eco_20184
| Organism | Gene name | Common name | Accession | Description | Start | Stop | Strand | Chromosome |
|---|---|---|---|---|---|---|---|---|
| Escherichia coli K-12 MG1655 | b0221 | yafH | NP_414756.2 | putative acyl-CoA dehydrogenase (EC 1.3.99.-) | 243303 | 240859 | - | NC_000913.2 |
| Escherichia coli K-12 MG1655 | b2868 | xdhC | NP_417344.1 | xanthine dehydrogenase, Fe-S binding subun | 3001511 | 3001990 | + | NC_000913.2 |
| Escherichia coli K-12 MG1655 | b3451 | ugpE | NP_417908.1 | glycerol-3-phosphate transporter subun | 3588050 | 3587205 | - | NC_000913.2 |
| Escherichia coli K-12 MG1655 | b3452 | ugpA | NP_417909.1 | glycerol-3-phosphate transporter subun | 3588934 | 3588047 | - | NC_000913.2 |
| Escherichia coli K-12 MG1655 | b3453 | ugpB | NP_417910.1 | glycerol-3-phosphate transporter subun | 3590348 | 3589032 | - | NC_000913.2 |
| Escherichia coli K-12 MG1655 | b4228 | 0 | 0 | + | NC_000913.2 | |||
| Escherichia coli K-12 MG1655 | b4230 | ytfT | NP_418651.3 | predicted sugar transporter subunit: membrane component of ABC superfamily | 4450594 | 4451619 | + | NC_000913.2 |
| Escherichia coli K-12 MG1655 | b4231 | yjfF | NP_418652.2 | putative transport system permease protein | 4451606 | 4452601 | + | NC_000913.2 |
| Escherichia coli K-12 MG1655 | b4301 | sgcE | NP_418721.1 | ribulose-phosphate 3-epimerase | 4525560 | 4524928 | - | NC_000913.2 |
| Escherichia coli K-12 MG1655 | b4302 | sgcA | NP_418722.1 | KpLE2 phage-like element; predicted phosphotransferase enzyme IIA componen | 4526003 | 4525572 | - | NC_000913.2 |
| Escherichia coli K-12 MG1655 | b4304 | sgcC | NP_418724.1 | KpLE2 phage-like element; predicted phosphotransferase enzyme IIC componen | 4528266 | 4526953 | - | NC_000913.2 |
| Escherichia coli K-12 MG1655 | b4305 | sgcX | NP_418725.4 | putative lyase/synthase | 4529674 | 4528553 | - | NC_000913.2 |
Conditions in eco_20184
| Condition ID | Condition Name |
|---|---|
| eco_110 | GSM1380 |
| eco_116 | GSM18256 |
| eco_119 | GSM18262 |
| eco_12 | Clean_ANA13 |
| eco_120 | GSM18263 |
| eco_122 | GSM18273 |
| eco_126 | GSM30817 |
| eco_128 | GSM30821 |
| eco_130 | GSM37067 |
| eco_135 | GSM37886 |
| eco_136 | GSM38547 |
| eco_145 | GSM65626 |
| eco_157 | GSM73141 |
| eco_158 | GSM73144 |
| eco_161 | GSM73151 |
| eco_162 | GSM73152 |
| eco_163 | GSM73155 |
| eco_165 | GSM73158 |
| eco_166 | GSM73159 |
| eco_168 | GSM73257 |
| eco_175 | GSM73272 |
| eco_183 | GSM77351 |
| eco_184 | GSM77353 |
| eco_189 | GSM8119 |
| eco_19 | Clean_DIAUX7 |
| eco_197 | GSM82616 |
| eco_207 | GSM83080 |
| eco_217 | GSM99091 |
| eco_223 | GSM99113 |
| eco_234 | GSM99152 |
| eco_252 | GSM99392 |
| eco_256 | GSM99401 |
| eco_273 | Clean_H2O23 |
| eco_274 | Clean_H2O26 |
| eco_286 | EC_LAC_LB_20_A |
| eco_287 | EC_LAC_LB_20_C |
| eco_31 | EC_GLY_GLY1_20_C |
| eco_314 | GSM106759 |
| eco_317 | GSM114370 |
| eco_330 | GSM1378 |
| eco_337 | GSM18281 |
| eco_339 | GSM23465 |
| eco_347 | GSM65624 |
| eco_354 | GSM73147 |
| eco_363 | GSM77358 |
| eco_370 | GSM82550 |
| eco_378 | GSM83066 |
| eco_393 | GSM99118 |
| eco_4 | 1597 |
| eco_414 | GSM99398 |
| eco_419 | 1637 |
| eco_430 | EC_GLY_GLY1_20_A |
| eco_439 | GADXW_exp1 |
| eco_454 | GSM118600 |
| eco_458 | GSM1382 |
| eco_461 | GSM18284 |
| eco_465 | GSM37068 |
| eco_467 | GSM37074 |
| eco_472 | GSM63896 |
| eco_479 | GSM67652 |
| eco_500 | GSM88913 |
| eco_504 | GSM98728 |
| eco_506 | GSM99086 |
| eco_512 | GSM99131 |
| eco_529 | 1292 |
| eco_531 | 1585 |
| eco_533 | 1916 |
| eco_551 | EC_LAC_LA_60_C |
| eco_559 | E-MEXP-267-raw-data-495080239.txt |
| eco_562 | GADXW_exp12 |
| eco_570 | GSM118618 |
| eco_572 | GSM1368 |
| eco_582 | GSM63891 |
| eco_599 | GSM94003 |
| eco_61 | E-MEXP-222-raw-data-386285038.txt |
| eco_613 | GSM99207 |
| eco_62 | E-MEXP-222-raw-data-386285101.txt |
| eco_622 | Clean_DIAUX16 |
| eco_639 | EC_LAC_LC_60_B |
| eco_64 | E-MEXP-245-raw-data-396455333.txt |
| eco_642 | E-MEXP-267-raw-data-495080335.txt |
| eco_644 | GSM101776 |
| eco_646 | GSM116027 |
| eco_663 | GSM65598 |
| eco_682 | GSM83054 |
| eco_713 | EC_LAC_LD_20_C |
| eco_735 | GSM73278 |
| eco_743 | GSM98722 |
| eco_758 | EC_GLY_GLYD_44_C |
| eco_759 | EC_GLY_WILD_C |
| eco_778 | GSM88919 |
| eco_78 | GSM101244 |
| eco_783 | Clean_DIAUX8 |
| eco_784 | crp__G |
| eco_788 | GSM101238 |
| eco_791 | GSM114383 |
| eco_80 | GSM101772 |
| eco_800 | GSM73284 |
| eco_810 | 5272 |
| eco_816 | GSM106755 |
| eco_820 | GSM89488 |
| eco_823 | EC_GLY_GLYB_44_B |
| eco_824 | E-MEXP-222-raw-data-386285069.txt |
| eco_829 | GSM67663 |
| eco_833 | GSM99177 |
| eco_84 | GSM106757 |
| eco_841 | GSM37076 |
| eco_842 | GSM65639 |
| eco_848 | GSM99639 |
| eco_852 | GSM99156 |
| eco_857 | EC_LAC_LC_60_C |
| eco_858 | GSM118609 |
| eco_87 | GSM111415 |
De novo detected cis-regulatory motifs
| CRM ID | eval | PSSM |
|---|---|---|
| eco_20184_2 | 210.0000 |  |
| eco_20184_3 | 98.0000 |  |
| eco_20184_1 | 23.0000 |  |
GREs assigned to eco_20184
| GRE ID | PSSM |
|---|---|
| eco_90 |  |
| eco_0 |  |
| eco_0 | |
Corems associated with eco_20184
| Corem |
|---|
| ec532115 |
| ec532117 |
| ec532123 |
| ec533845 |
| ec544780 |
| ec619158 |
| ec619180 |