hal_1208 Co-expression

Genes in hal_1208

Organism Gene name Common name Accession Description Start Stop Strand Chromosome
Halobacterium salinarum sp. NRC-1 VNG0028C VNG0028C NP_279188.1 Vng0028c 23336 23890 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0053H VNG0053H NP_279211.1 Vng0053h 48767 49222 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0062G lpb NP_279220.1 LPS biosynthesis protein 61625 60609 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0243C 0 0 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0301C VNG0301C NP_279403.1 Vng0301c 237666 237133 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0407H VNG0407H NP_279480.1 Vng0407h 314971 314156 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0492H VNG0492H NP_279547.1 Vng0492h 383294 382599 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0595H VNG0595H NP_279626.1 Vng0595h 455086 454472 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0609C VNG0609C NP_279637.1 Vng0609c 462840 462193 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0622H VNG0622H NP_279646.1 Vng0622h 474712 473684 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0752G galE1 NP_279747.1 UDP-glucose 4-epimerase 570320 569376 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0837H VNG0837H NP_279811.1 Vng0837h 636909 637199 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0938G gufA NP_279888.1 GufA protein 716419 715619 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1039H VNG1039H NP_279969.1 Vng1039h 794483 795025 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1209G hutG NP_280098.1 formiminoglutamate hydrolase 909509 910429 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1470G pri NP_280294.1 DNA primase 1090362 1091636 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1514H VNG1514H NP_280327.1 Vng1514h 1126644 1126036 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1529G mmdA NP_280337.1 methylmalonyl-CoA decarboxylase, subunit alpha 1137505 1139055 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1574G cobI NP_280371.1 cobalamin adenosyltransferase 1176275 1176952 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1788C VNG1788C NP_280530.1 Vng1788c 1324332 1325255 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1816G trh3 NP_280549.1 transcription regulator 1344157 1344570 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2087G hisH NP_280754.2 imidazole glycerol phosphate synthase subunit HisH 1533185 1533841 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2458C VNG2458C NP_281055.1 Vng2458c 1841904 1841332 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2638G bchP NP_281191.1 geranylgeranyl hydrogenase 1975213 1976295 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG5079H VNG7056 NP_046001.1 ORF H0618 57249 56131 - NC_001869.1
Halobacterium salinarum sp. NRC-1 VNG5166H VNG7117 NP_046062.1 ORF H1378 130628 130840 + NC_001869.1
Halobacterium salinarum sp. NRC-1 VNG6133H VNG6133H NP_395673.1 Vng6133h 102864 103040 + NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6348H VNG6348H NP_395838.1 Vng6348h 279653 279159 - NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6364H VNG6364H NP_395849.1 Vng6364h 293988 293341 - NC_002608.1

Conditions in hal_1208

Condition ID Condition Name
hal_1 light2__1440m_vs_light1_3960m
hal_10 light2__3060m_vs_light1_3960m
hal_1060 o2_set1_0001m_L2H_500_vs_NRC-1c
hal_1061 o2_set1_0005m_H_922_vs_NRC-1c
hal_1062 o2_set1_0010m_H_947_vs_NRC-1c
hal_1063 o2_set1_0020m_H_937_vs_NRC-1c
hal_1064 o2_set1_0030m_H_931_vs_NRC-1c
hal_1065 o2_set1_0045m_H_939_vs_NRC-1c
hal_1066 o2_set1_0090m_H_941_vs_NRC-1c
hal_1071 o2_set1_0372m_H2L_079_vs_NRC-1c
hal_1073 o2_set1_0387m_L_041_vs_NRC-1c
hal_1074 o2_set1_0392m_L_037_vs_NRC-1c
hal_1075 o2_set1_0397m_L_035_vs_NRC-1c
hal_1076 o2_set1_0407m_L_030_vs_NRC-1c
hal_1078 o2_set1_0432m_L_024_vs_NRC-1c
hal_1080 o2_set1_0567m_L_011_vs_NRC-1c
hal_1081 o2_set1_0747m_L_008_vs_NRC-1c
hal_1082 o2_set1_0750m_L2H_540_vs_NRC-1c
hal_1083 o2_set1_0755m_L2H_825_vs_NRC-1c
hal_1084 o2_set1_0760m_L2H_847_vs_NRC-1c
hal_1086 o2_set1_0780m_L2H_847_vs_NRC-1c
hal_18 light2__4500m_vs_light1_3960m
hal_24 light2__5580m_vs_light1_3960m
hal_27 dark2__0060m_vs_NRC-1c
hal_275 zn__0005um_vs_NRC-1
hal_276 zn__0010um_vs_NRC-1
hal_277 zn__0020um_vs_NRC-1
hal_279 cu__0850um_vs_NRC-1
hal_28 dark2__0300m_vs_NRC-1c
hal_30 dark2__0780m_vs_NRC-1c
hal_31 dark2__1020m_vs_NRC-1c
hal_32 dark2__1260m_vs_NRC-1c
hal_33 dark2__1500m_vs_NRC-1c
hal_34 dark2__1740m_vs_NRC-1c
hal_35 dark2__1980m_vs_NRC-1c
hal_37 dark2__2460m_vs_NRC-1c
hal_39 dark2__2940m_vs_NRC-1c
hal_40 dark2__3180m_vs_NRC-1c
hal_41 dark2__3420m_vs_NRC-1c
hal_42 dark2__3660m_vs_NRC-1c
hal_434 ni__0000um_vs_NRC-1c
hal_435 ni__0500um_vs_NRC-1c
hal_437 ni__1500um_vs_NRC-1c
hal_438 mn__0800um_vs_NRC-1
hal_45 dark1__0240m_vs_NRC-1c
hal_458 fe__2000um_vs_NRC-1
hal_459 fe__4000um_vs_NRC-1
hal_46 dark1__0480m_vs_NRC-1c
hal_464 feso4__0005m_vs_NRC-1b
hal_465 feso4__0010m_vs_NRC-1b
hal_47 dark1__0720m_vs_NRC-1c
hal_471 feso4__0160m_vs_NRC-1
hal_48 dark1__0960m_vs_NRC-1c
hal_481 co__0000um_vs_NRC-1c
hal_483 co__0300um_vs_NRC-1c
hal_484 co__0500um_vs_NRC-1c
hal_49 dark1__1200m_vs_NRC-1c
hal_494 VNG2334C__LO_L_vs_NRC-1
hal_495 VNG1296C__HO_D_vs_NRC-1
hal_496 VNG1296C__HO_L_vs_NRC-1
hal_5 light2__2160m_vs_light1_3960m
hal_50 dark1__1440m_vs_NRC-1c
hal_502 VNG0750C__LO_L_vs_NRC-1
hal_506 VNG0019H__LO_L_vs_NRC-1c
hal_507 uv__000jm2_CL_060m
hal_508 ura3__HO_D_vs_NRC-1
hal_509 ura3__HO_L_vs_NRC-1
hal_511 ura3__LO_L_vs_NRC-1
hal_513 tfb_D_vs_NRC-1c
hal_518 tbp_C_vs_NRC-1c
hal_52 dark1__1920m_vs_NRC-1c
hal_520 sop2_II__HO_D_vs_NRC-1c
hal_522 sop2_II__LO_D_vs_NRC-1c
hal_527 sop2_I__LO_L_vs_NRC-1
hal_531 phr2__LO_L_vs_NRC-1
hal_532 phr1_and_2__HO_D_vs_NRC-1
hal_533 phr1_and_2__HO_L_vs_NRC-1
hal_534 phr1_and_2__LO_D_vs_NRC-1
hal_535 phr1_and_2__LO_L_vs_NRC-1
hal_536 phr1__HO_D_vs_NRC-1
hal_539 phr1__LO_L_vs_NRC-1
hal_54 dark1__2400m_vs_NRC-1c
hal_541 phoR__HO_L_vs_NRC-1
hal_542 phoR__LO_D_vs_NRC-1
hal_543 phoR__LO_L_vs_NRC-1
hal_55 dark1__2640m_vs_NRC-1c
hal_555 kinA2_II__HO_D_vs_NRC-1c
hal_556 kinA2_II__HO_L_vs_NRC-1c
hal_557 kinA2_II__LO_D_vs_NRC-1c
hal_56 dark1__2880m_vs_NRC-1c
hal_562 kinA2_I__LO_L_vs_NRC-1
hal_563 htr8__HO_D_vs_NRC-1
hal_565 htr8__LO_D_vs_NRC-1
hal_569 htr2__LO_D_vs_NRC-1
hal_57 dark1__3120m_vs_NRC-1c
hal_572 htr1__HO_L_vs_NRC-1
hal_575 htlD__HO_D_vs_NRC-1
hal_576 htlD__HO_L_vs_NRC-1
hal_577 htlD__LO_D_vs_NRC-1
hal_578 htlD__LO_L_vs_NRC-1
hal_579 gap__HO_D_vs_NRC-1c
hal_58 dark1__3360m_vs_NRC-1c
hal_580 gap__HO_L_vs_NRC-1c
hal_581 gap__LO_D_vs_NRC-1c
hal_582 gap__LO_L_vs_NRC-1c
hal_59 dark1__3600m_vs_NRC-1c
hal_592 gamma__0000gy-0000m
hal_593 gamma__0000gy-0010m
hal_594 gamma__0000gy-0030m
hal_595 gamma__0000gy-0060m
hal_597 gamma__0000gy-0960m
hal_60 dark1__3870m_vs_NRC-1c
hal_61 dark1__4110m_vs_NRC-1c
hal_618 bop__HO_D_vs_NRC-1
hal_623 boa4__HO_L_vs_NRC-1
hal_625 boa4__LO_L_vs_NRC-1
hal_629 boa1__LO_L_vs_NRC-1
hal_631 ark__HO_L_vs_NRC-1
hal_633 ark__LO_L_vs_NRC-1
hal_634 afsQ2__HO_D_vs_NRC-1
hal_635 afsQ2__HO_L_vs_NRC-1
hal_636 afsQ2__LO_D_vs_NRC-1
hal_892 gamma4__2500gy-060min
hal_895 gamma__2500gy-0000m
hal_896 gamma__2500gy-0010m
hal_897 gamma__2500gy-0020m
hal_898 gamma__2500gy-0030m
hal_899 gamma__2500gy-0040m
hal_900 gamma__2500gy-0060m
hal_901 gamma__2500gy-0120m
hal_902 gamma__2500gy-0240m
hal_903 gamma__2500gy-0480m
hal_904 gamma__2500gy-0960m
hal_964 uv__200jm2_L_060m

De novo detected cis-regulatory motifs

CRM ID eval PSSM
hal_1208_1 0.0000
hal_1208_2 5600.0000

GREs assigned to hal_1208

GRE ID PSSM
hal_61
hal_0

Corems associated with hal_1208

Corem
hc2913
hc36696
hc80
hc8054