hal_15065 Co-expression

Genes in hal_15065

Organism Gene name Common name Accession Description Start Stop Strand Chromosome
Halobacterium salinarum sp. NRC-1 VNG0049H VNG0049H NP_279207.1 Vng0049h 41880 42659 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0098G rimK NP_279247.1 ribosomal protein S6 modification protein 83789 82932 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0147C VNG0147C NP_279286.1 Vng0147c 120226 119759 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0174G cat1 NP_279309.1 cationic amino acid transporter 148838 151168 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0399H VNG0399H NP_279473.1 Vng0399h 307168 306701 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0472H VNG0472H NP_279531.1 Vng0472h 364889 364473 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0754C VNG0754C NP_279749.1 Vng0754c 572417 571614 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0874G traB NP_279837.1 possible signaling protein 659810 661324 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0943C VNG0943C NP_279892.1 Vng0943c 720331 720678 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1007H VNG1007H NP_279943.1 Vng1007h 771925 771722 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1083G menF NP_280001.1 isochorismate synthase 830572 829247 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1224G orc8 NP_280108.1 orc / cell division control protein 6 920669 921862 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1250H VNG1250H NP_280129.1 Vng1250h 940758 939667 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1320G cbp NP_280182.1 calcium-binding protein homology 986348 987505 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1379G suhB NP_280225.1 extragenic suppressor homolog 1028247 1027447 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1471C VNG1471C NP_280295.1 Vng1471c 1091633 1092457 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1766C VNG1766C NP_280510.1 Vng1766c 1308028 1307267 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1773G cad NP_280517.1 pterin-4a-carbinolamine dehydratase 1313342 1313067 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1782C VNG1782C NP_280524.1 Vng1782c 1319025 1319999 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1830G pyrG NP_280558.1 CTP synthase 1351708 1350047 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1948H VNG1948H NP_280651.1 Vng1948h 1434889 1435803 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2020C VNG2020C NP_280705.1 Vng2020c 1493509 1492979 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2067H VNG2067H NP_280738.1 Vng2067h 1519017 1519487 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2117C VNG2117C NP_280777.1 Vng2117c 1556149 1555430 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2207H VNG2207H NP_280857.1 Vng2207h 1637807 1636674 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2411G orc7 NP_281018.1 orc / cell division control protein 6 1807230 1808786 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2577C VNG2577C NP_281143.1 Vng2577c 1933410 1933832 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2642H VNG2642H NP_281195.1 Vng2642h 1979205 1980146 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG5011H VNG7009 NP_045954.1 ORF H0073 7860 5542 - NC_001869.1
Halobacterium salinarum sp. NRC-1 VNG5050H 0 0 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG5061C VNG7042 NP_045987.1 ORF H0532 45632 45387 - NC_001869.1
Halobacterium salinarum sp. NRC-1 VNG5093C VNG7069 NP_046014.1 ORF H0754 68682 68245 - NC_001869.1
Halobacterium salinarum sp. NRC-1 VNG5146H VNG7104 NP_046049.1 ORF H1243 115884 116498 + NC_001869.1
Halobacterium salinarum sp. NRC-1 VNG6182H VNG6182H NP_395714.1 Vng6182h 155989 155600 - NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6302C VNG6302C NP_395802.1 Vng6302c 234195 235574 + NC_002608.1

Conditions in hal_15065

Condition ID Condition Name
hal_1020 troR_0min_-EDTA_CM_vs_NRC1-h1.sig
hal_1021 troR_20min_-EDTA_CM_vs_NRC1-h1.sig
hal_1023 troR_60min_-EDTA_CM_vs_NRC1-h1.sig
hal_1148 20061006_Cmyc_tfbE_rep2_0.439_vs_NRC-1e
hal_1149 20061006_Cmyc_tfbE_rep2_0.877_vs_NRC-1e
hal_1168 20060818_KO_ura3_rep1_0.178_vs_NRC-1e.sig
hal_1169 20060818_KO_ura3_rep1_0.405_vs_NRC-1e.sig
hal_1170 20060818_KO_ura3_rep1_0.842_vs_NRC-1e.sig
hal_1183 20060818_KO_tfbA_rep2_0.208_vs_NRC-1e.sig
hal_1184 20060818_KO_tfbA_rep2_0.425_vs_NRC-1e.sig
hal_1185 20060818_KO_tfbA_rep2_0.839_vs_NRC-1e.sig
hal_1278 Cmy_cspD2_1_hOD_vs_NRC-1d.sig
hal_1279 Cmy_cspD2_1_mOD_vs_NRC-1d.sig
hal_1280 Cmy_cspD2_2_hOD_vs_NRC-1d.sig
hal_1283 Cmy_cspD1_1_mOD_vs_NRC-1d.sig
hal_1285 Cmy_cspD1_2_mOD_vs_NRC-1d.sig
hal_1310 20050726_Cmyc_tfbA_rep2_0.144_vs_NRC-1d.sig
hal_1342 20050620_Cmyc_rep2_0.177_vs_NRC-1d.sig
hal_1344 20050620_Cmyc_rep2_1.072_vs_NRC-1d.sig
hal_1355 H2O2_Recov._set_1_0mM_060min_vs_NRC-1d.sig
hal_1357 KO_asnC.2_0.1825_vs_NRC-1_h1.sig
hal_136 circadian_dark3_cycling_1380min_vs_NRC-1d.sig
hal_1385 KO_trh4.2_0.1729_vs_NRC-1_h1.sig
hal_1386 KO_trh4.2_0.279_vs_NRC-1_h1.sig
hal_1390 KO_ura3.1_0.3501_vs_NRC-1_h1.sig
hal_1395 KO_trh3.2_0.5673_vs_NRC-1_h1.sig
hal_1409 gamma3__2500gy-0000m
hal_1411 gamma3__2500gy-0020m
hal_1413 gamma3__2500gy-0040m
hal_1414 gamma3__2500gy-0050m
hal_1415 gamma3__2500gy-0060m
hal_1416 gamma3__2500gy-0120m
hal_142 circadian_dark3_cycling_2160min_vs_NRC-1d.sig
hal_1462 sDura3_pCu_d0.100mM_t+030m_vs_NRC-1h1.sig
hal_1465 sDura3_pCu_d0.100mM_t-015m_vs_NRC-1h1.sig
hal_179 Circadian_Dark9_Cycling_0000min_vs_NRC-1g.sig
hal_180 Circadian_Dark9_Cycling_0180min_vs_NRC-1g.sig
hal_181 Circadian_Dark9_Cycling_0360min_vs_NRC-1g.sig
hal_182 Circadian_Dark9_Cycling_0535min_vs_NRC-1g.sig
hal_183 Circadian_Dark9_Cycling_0720min_vs_NRC-1g.sig
hal_184 Circadian_Dark9_Cycling_0900min_vs_NRC-1g.sig
hal_185 Circadian_Dark9_Cycling_1080min_vs_NRC-1g.sig
hal_186 Circadian_Dark9_Cycling_1265min_vs_NRC-1g.sig
hal_187 Circadian_Dark9_Cycling_1440min_vs_NRC-1g.sig
hal_188 Circadian_Dark9_Cycling_1620min_vs_NRC-1g.sig
hal_189 Circadian_Dark9_Cycling_1800min_vs_NRC-1g.sig
hal_191 Circadian_Dark9_Cycling_2160min_vs_NRC-1g.sig
hal_192 Circadian_Dark9_Cycling_2340min_vs_NRC-1g.sig
hal_193 Circadian_Dark9_Cycling_2520min_vs_NRC-1g.sig
hal_194 Circadian_Dark9_Cycling_2700min_vs_NRC-1g.sig
hal_195 Circadian_Dark9_Cycling_2880min_vs_NRC-1g.sig
hal_196 Circadian_Dark9_Cycling_3060min_vs_NRC-1g.sig
hal_197 Circadian_Dark9_Cycling_3240min_vs_NRC-1g.sig
hal_198 Circadian_Dark9_Cycling_3420min_vs_NRC-1g.sig
hal_199 Circadian_Dark9_Cycling_3600min_vs_NRC-1g.sig
hal_200 Circadian_Dark9_Cycling_3780min_vs_NRC-1g.sig
hal_201 Circadian_Dark9_Cycling_3960min_vs_NRC-1g.sig
hal_202 Circadian_Dark9_Cycling_4140min_vs_NRC-1g.sig
hal_203 Circadian_Dark9_Cycling_4320min_vs_NRC-1g.sig
hal_204 Circadian_Dark9_Cycling_4500min_vs_NRC-1g.sig
hal_205 Circadian_Dark9_Control_0000min_vs_NRC-1g.sig
hal_206 Circadian_Dark9_Control_0180min_vs_NRC-1g.sig
hal_207 Circadian_Dark9_Control_0360min_vs_NRC-1g.sig
hal_208 Circadian_Dark9_Control_0535min_vs_NRC-1g.sig
hal_209 Circadian_Dark9_Control_0720min_vs_NRC-1g.sig
hal_210 Circadian_Dark9_Control_1080min_vs_NRC-1g.sig
hal_211 Circadian_Dark9_Control_1265min_vs_NRC-1g.sig
hal_212 Circadian_Dark9_Control_1440min_vs_NRC-1g.sig
hal_213 Circadian_Dark9_Control_1620min_vs_NRC-1g.sig
hal_214 Circadian_Dark9_Control_1800min_vs_NRC-1g.sig
hal_215 Circadian_Dark9_Control_1980min_vs_NRC-1g.sig
hal_216 Circadian_Dark9_Control_2160min_vs_NRC-1g.sig
hal_217 Circadian_Dark9_Control_2340min_vs_NRC-1g.sig
hal_218 Circadian_Dark9_Control_2520min_vs_NRC-1g.sig
hal_219 Circadian_Dark9_Control_2700min_vs_NRC-1g.sig
hal_220 Circadian_Dark9_Control_2880min_vs_NRC-1g.sig
hal_221 Circadian_Dark9_Control_3060min_vs_NRC-1g.sig
hal_222 Circadian_Dark9_Control_3240min_vs_NRC-1g.sig
hal_223 Circadian_Dark9_Control_3420min_vs_NRC-1g.sig
hal_224 Circadian_Dark9_Control_3600min_vs_NRC-1g.sig
hal_225 Circadian_Dark9_Control_3780min_vs_NRC-1g.sig
hal_226 Circadian_Dark9_Control_3960min_vs_NRC-1g.sig
hal_227 Circadian_Dark9_Control_4140min_vs_NRC-1g.sig
hal_228 Circadian_Dark9_Control_4320min_vs_NRC-1g.sig
hal_229 Circadian_Dark9_Control_4500min_vs_NRC-1g.sig
hal_281 Cu_-5_vs_NRC-1.sig
hal_283 Cu_005_vs_NRC-1.sig
hal_284 Cu_010_vs_NRC-1.sig
hal_287 Cu_080_vs_NRC-1.sig
hal_44 dark1__0000m_vs_NRC-1c
hal_453 sirR_60min_+Fe_vs_NRC1_h1.sig
hal_488 zim__HO_L_vs_NRC-1
hal_53 dark1__2160m_vs_NRC-1c
hal_555 kinA2_II__HO_D_vs_NRC-1c
hal_560 kinA2_I__HO_L_vs_NRC-1
hal_562 kinA2_I__LO_L_vs_NRC-1
hal_571 htr1__HO_D_vs_NRC-1
hal_592 gamma__0000gy-0000m
hal_672 Dura3_Uracil_0690_0.197_rep1_vs_NRC-1g.sig
hal_673 Dura3_Uracil_1200_0.465_rep1_vs_NRC-1g.sig
hal_675 Dura3_Uracil_2280_0.832_rep1_vs_NRC-1g.sig
hal_736 PQ_Const._set_2_0mM_000min_vs_NRC-1f.sig
hal_737 PQ_Const._set_2_0mM_030min_vs_NRC-1f.sig
hal_770 MDM200gSalt_0.388_vs_NRC-1e.sig
hal_877 gamma2__2500gy-0000m
hal_878 gamma2__2500gy-0010m
hal_879 gamma2__2500gy-0020m
hal_880 gamma2__2500gy-0030m
hal_881 gamma2__2500gy-0040m
hal_882 gamma2__2500gy-0050m
hal_883 gamma2__2500gy-0060m
hal_884 gamma2__2500gy-0120m
hal_918 H2O2_Const._set_2_25mM_240min_vs_NRC-1f.sig
hal_920 PQ_Recov._set_2_4mM_010min_vs_NRC-1f.sig
hal_923 PQ_Recov._set_2_4mM_040min_vs_NRC-1f.sig
hal_925 PQ_Recov._set_2_4mM_060min_vs_NRC-1f.sig
hal_965 KO_1179C.1_0.1694_vs_NRC-1_h1.sig
hal_966 KO_1179C.1_0.3684_vs_NRC-1_h1.sig
hal_967 KO_1179C.1_0.613_vs_NRC-1_h1.sig

De novo detected cis-regulatory motifs

CRM ID eval PSSM
hal_15065_1 23.0000
hal_15065_2 5.2000

GREs assigned to hal_15065

GRE ID PSSM
hal_0
hal_0

Corems associated with hal_15065

Corem
hc1733
hc1837
hc2493
hc2495
hc2496
hc320
hc33963
hc35043
hc4033
hc41739
hc6390
hc99