hal_16964 Co-expression

Genes in hal_16964

Organism Gene name Common name Accession Description Start Stop Strand Chromosome
Halobacterium salinarum sp. NRC-1 VNG1528G nac NP_280336.1 sodium- and chloride-dependent transporter 1136003 1137436 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1589C VNG1589C NP_280381.1 Vng1589c 1188524 1188937 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG5068G VNG7048 NP_045993.1 ORF H0562 50012 49236 - NC_001869.1
Halobacterium salinarum sp. NRC-1 VNG5069C VNG7049 NP_045994.1 ORF H0571 50060 51169 + NC_001869.1
Halobacterium salinarum sp. NRC-1 VNG6179G cat3 NP_395711.1 cationic amino acid transporter 152033 152851 + NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6199G cdc48d NP_395729.1 cell division cycle protein 166403 164190 - NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6230G gvpK2 NP_395752.1 GvpK protein, cluster 187505 187146 - NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6232G gvpJ2 NP_395753.1 GvpJ protein, cluster 187803 187507 - NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6233G gvpI2 NP_395754.1 GvpI protein, cluster 188141 187800 - NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6235G gvpH2 NP_395755.1 GvpH protein, cluster 188629 188138 - NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6236G gvpG2 NP_395756.1 GvpG protein, cluster 188817 188629 - NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6237G gvpF2 NP_395757.1 GvpF protein, cluster 189536 188883 - NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6239G gvpE2 NP_395758.1 GvpE protein, cluster 190110 189529 - NC_002608.1
Halobacterium salinarum sp. NRC-1 VNG6266H VNG6266H NP_395776.1 Vng6266h 205846 205403 - NC_002608.1

Conditions in hal_16964

Condition ID Condition Name
hal_1009 idr1_20min_-EDTA_CM_vs_NRC1-h1.sig
hal_1011 idr1_60min_-EDTA_CM_vs_NRC1-h1.sig
hal_1017 sirR_20min_-EDTA_CM_vs_NRC1-h1.sig
hal_1018 sirR_40min_-EDTA_CM_vs_NRC1-h1.sig
hal_1024 ura3_0min_-EDTA_CM_vs_NRC1-h1.sig
hal_1025 ura3_20min_-EDTA_CM_vs_NRC1-h1.sig
hal_1026 ura3_40min_-EDTA_CM_vs_NRC1-h1.sig
hal_1027 ura3_60min_-EDTA_CM_vs_NRC1-h1.sig
hal_1120 gamma3__0000gy-0000m
hal_1121 gamma3__0000gy-0010m
hal_1123 gamma3__0000gy-0030m
hal_1124 gamma3__0000gy-0040m
hal_1125 gamma3__0000gy-0050m
hal_1237 20060717_Cmyc_rep2_0.223_vs_NRC-1e.sig
hal_1239 20060717_Cmyc_rep2_0.883_vs_NRC-1e.sig
hal_1252 20060308_KO_tfbD_rep1_0.424_vs_NRC-1e.sig
hal_1280 Cmy_cspD2_2_hOD_vs_NRC-1d.sig
hal_1281 Cmy_cspD2_2_mOD_vs_NRC-1d.sig
hal_1282 Cmy_cspD1_1_hOD_vs_NRC-1d.sig
hal_1285 Cmy_cspD1_2_mOD_vs_NRC-1d.sig
hal_1286 20050726_Cmyc_tfbF_rep2_0.180_vs_NRC-1d.sig
hal_1289 20050726_Cmyc_tfbF_rep2_0.918_vs_NRC-1d.sig
hal_1298 20050726_Cmyc_tfbC_rep1_0.132_vs_NRC-1d.sig
hal_1299 20050726_Cmyc_tfbC_rep1_0.394_vs_NRC-1d.sig
hal_1302 20050726_Cmyc_tfbB_rep2_0.152_vs_NRC-1d.sig
hal_1303 20050726_Cmyc_tfbB_rep2_0.496_vs_NRC-1d.sig
hal_1304 20050726_Cmyc_tfbB_rep2_0.840_vs_NRC-1d.sig
hal_1306 20050726_Cmyc_tfbB_rep1_0.157_vs_NRC-1d.sig
hal_1336 20050620_Cmyc_tfbD_rep2_0.153_vs_NRC-1d.sig
hal_1345 20050620_Cmyc_rep1_0.207_vs_NRC-1d.sig
hal_1346 20050620_Cmyc_rep1_0.474_vs_NRC-1d.sig
hal_1347 20050620_Cmyc_rep1_1.052_vs_NRC-1d.sig
hal_1349 H2O2_Recov._set_1_0mM_000min_vs_NRC-1d.sig
hal_1351 H2O2_Recov._set_1_0mM_020min_vs_NRC-1d.sig
hal_1353 H2O2_Recov._set_1_0mM_040min_vs_NRC-1d.sig
hal_1354 H2O2_Recov._set_1_0mM_050min_vs_NRC-1d.sig
hal_1356 H2O2_Recov._set_1_0mM_120min_vs_NRC-1d.sig
hal_1360 KO_asnC.2_1.3133_vs_NRC-1_h1.sig
hal_138 circadian_dark3_cycling_1500min_vs_NRC-1d.sig
hal_142 circadian_dark3_cycling_2160min_vs_NRC-1d.sig
hal_143 circadian_dark3_cycling_2220min_vs_NRC-1d.sig
hal_1447 sDura3D1179_pZn_d0.005mM_t+030m_vs_NRC-1h1.sig
hal_1448 sDura3D1179_pZn_d0.005mM_t+060m_vs_NRC-1h1.sig
hal_1449 sDura3D1179_pZn_d0.005mM_t+180m_vs_NRC-1h1.sig
hal_146 circadian_dark3_cycling_2700min_vs_NRC-1d.sig
hal_309 ZnSO4_set2_010min_vs_NRC-1h1.sig
hal_313 ZnSO4_set2_030min_vs_NRC-1h1.sig
hal_317 ZnSO4_set2_120min_vs_NRC-1h1.sig
hal_318 ZnSO4_set2_160min_vs_NRC-1h1.sig
hal_319 ZnSO4_set2_320min_vs_NRC-1h1.sig
hal_408 ura3_0a_vs_NRC-1d.sig
hal_409 ura3_0b_vs_NRC-1d.sig
hal_410 ura3_Cu_0700um_a_vs_NRC-1d.sig
hal_414 ura3_Cu_0850um_b_vs_NRC-1d.sig
hal_416 ura3_Mn_0800um_a_vs_NRC-1d.sig
hal_417 ura3_Mn_1500um_a_vs_NRC-1d.sig
hal_419 ura3_Mn_0800um_b_vs_NRC-1d.sig
hal_420 ura3_Mn_1500um_b_vs_NRC-1d.sig
hal_434 ni__0000um_vs_NRC-1c
hal_435 ni__0500um_vs_NRC-1c
hal_437 ni__1500um_vs_NRC-1c
hal_510 ura3__LO_D_vs_NRC-1
hal_511 ura3__LO_L_vs_NRC-1
hal_648 NRC1_H2O_1860_0.758_rep1_vs_NRC-1g.sig
hal_649 NRC1_H2O_2280_0.781_rep1_vs_NRC-1g.sig
hal_650 NRC1_H2O_2760_0.913_rep1_vs_NRC-1g.sig
hal_651 NRC1_H2O_3120_1.023_rep1_vs_NRC-1g.sig
hal_653 NRC1_Uracil_0890_0.420_rep2_vs_NRC-1g.sig
hal_656 NRC1_Uracil_2280_0.881_rep2_vs_NRC-1g.sig
hal_657 NRC1_Uracil_2760_1.133_rep2_vs_NRC-1g.sig
hal_658 NRC1_Uracil_3120_1.296_rep2_vs_NRC-1g.sig
hal_688 NRC1_03960_0.409_rep2_vs_NRC-1g.sig
hal_691 NRC1_05400_0.786_rep2_vs_NRC-1g.sig
hal_692 NRC1_05778_0.722_rep2_vs_NRC-1g.sig
hal_693 NRC1_07020_1.318_rep2_vs_NRC-1g.sig
hal_694 NRC1_07740_2.681_rep2_vs_NRC-1g.sig
hal_695 NRC1_08460_3.840_rep2_vs_NRC-1g.sig
hal_698 NRC1_10980_4.935_rep2_vs_NRC-1g.sig
hal_699 NRC1_11700_5.730_rep2_vs_NRC-1g.sig
hal_72 circadian_drk8_cycling_0180min_vs_NRC-1e.sig
hal_743 H2O2_Recov._set_2_0mM_020min_vs_NRC-1f.sig
hal_744 H2O2_Recov._set_2_0mM_030min_vs_NRC-1f.sig
hal_745 H2O2_Recov._set_2_0mM_040min_vs_NRC-1f.sig
hal_746 H2O2_Recov._set_2_0mM_050min_vs_NRC-1f.sig
hal_747 H2O2_Recov._set_2_0mM_060min_vs_NRC-1f.sig
hal_749 H2O2_Recov._set_2_0mM_240min_vs_NRC-1f.sig
hal_76 circadian_drk8_cycling_0900min_vs_NRC-1e.sig
hal_79 circadian_drk8_cycling_1440min_vs_NRC-1e.sig
hal_794 ura3_-glu_a_OD0.6_vs_NRC1e.sig
hal_798 ura3_-glu_a_OD1.2_vs_NRC1e.sig
hal_799 1451_growth_t4_exp2_0.5OD_vs_NRC1f.sig
hal_80 circadian_drk8_cycling_1620min_vs_NRC-1e.sig
hal_801 1451_growth_t2_exp3_0.2OD_vs_NRC1f.sig
hal_804 ura3_growth_t4_exp2_1.2OD_vs_NRC1f.sig
hal_807 ura3_growth_t3_exp3_0.8OD_vs_NRC1f.sig
hal_808 ura3_growth_t4_exp3_1.2OD_vs_NRC1f.sig
hal_815 1451_-glu_ab_OD0.2_vs_NRC1e.sig
hal_816 1451_-glu_a_OD0.6repl_vs_NRC1e.sig
hal_817 1451_-glu_a_OD1.2repl_vs_NRC1g.sig
hal_82 circadian_drk8_cycling_1980min_vs_NRC-1e.sig
hal_820 ura3_+glu_a_OD0.2_vs_NRC1e.sig
hal_823 ura3_+glu_b_OD0.2_vs_NRC1g.sig
hal_826 ura3_-glu_a_OD0.2_vs_NRC1e.sig
hal_827 ura3_-glu_a_OD0.6repl_vs_NRC1e.sig
hal_828 ura3_-glu_a_OD1.2repl_vs_NRC1e.sig
hal_83 circadian_drk8_cycling_2160min_vs_NRC-1e.sig
hal_864 ura3_growth_t3exp1_0.8OD_vs_NRC1e.sig
hal_87 circadian_drk8_cycling_2880min_vs_NRC-1e.sig
hal_89 circadian_drk8_cycling_3240min_vs_NRC-1e.sig
hal_914 H2O2_Const._set_2_25mM_000min_vs_NRC-1f.sig
hal_917 H2O2_Const._set_2_25mM_120min_vs_NRC-1f.sig
hal_918 H2O2_Const._set_2_25mM_240min_vs_NRC-1f.sig
hal_957 PQ_Const._set_1_4mM_030min_vs_NRC-1f.sig
hal_958 PQ_Const._set_1_4mM_060min_vs_NRC-1f.sig
hal_982 ura3_20min_1mM_EDTA_vs_NRC1-h1.sig
hal_983 ura3_40min_1mM_EDTA_vs_NRC1-h1.sig
hal_990 idr1_20min_1mM_EDTA_vs_NRC1-h1.sig
hal_992 idr1_60min_1mM_EDTA_vs_NRC1-h1.sig

De novo detected cis-regulatory motifs

CRM ID eval PSSM
hal_16964_1 0.0000
hal_16964_2 0.0110

GREs assigned to hal_16964

GRE ID PSSM
hal_0
hal_0

Corems associated with hal_16964

Corem
hc39290
hc39314
hc39317
hc39330