hal_24146 Co-expression

Genes in hal_24146

Organism Gene name Common name Accession Description Start Stop Strand Chromosome
Halobacterium salinarum sp. NRC-1 VNG0291H VNG0291H NP_279396.1 Vng0291h 232645 231863 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0293H VNG0293H NP_279397.1 Vng0293h 232952 232683 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0402H VNG0402H NP_279475.1 Vng0402h 309685 309533 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0520H VNG0520H NP_279568.1 Vng0520h 401008 400823 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0705C VNG0705C NP_279710.1 Vng0705c 534006 532495 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0745G spoVR NP_279741.1 spore cortex synthesis protein 562254 560272 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0748G prkA NP_279743.1 kinase anchor protein 565773 563560 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0750C VNG0750C NP_279745.1 Vng0750c 568228 568947 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1264C VNG1264C NP_280141.1 Vng1264c 951319 950936 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1540G ywfD NP_280345.1 glucose 1-dehydrogenase 1148264 1147554 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1667G cdc48c NP_280439.1 cell division cycle protein 1242669 1244897 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1856G htr3 NP_280580.1 Htr3 transducer 1372538 1370637 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1857C VNG1857C NP_280581.1 Vng1857c 1374292 1373051 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1864G hit2 NP_280585.1 histidine triad protein 1377889 1377344 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1865H VNG1865H NP_280586.1 Vng1865h 1378010 1378210 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1924G trkA6 NP_280632.1 TRK potassium uptake system protein 1420965 1420186 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1925H VNG1925H NP_280633.1 Vng1925h 1421025 1421192 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2259C VNG2259C NP_280898.1 Vng2259c 1680625 1682103 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2430G thrC1 NP_281034.1 threonine synthase 1826329 1825082 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2431C VNG2431C NP_281035.1 Vng2431c 1826666 1826400 - NC_002607.1

Conditions in hal_24146

Condition ID Condition Name
hal_1010 idr1_40min_-EDTA_CM_vs_NRC1-h1.sig
hal_1019 sirR_60min_-EDTA_CM_vs_NRC1-h1.sig
hal_1024 ura3_0min_-EDTA_CM_vs_NRC1-h1.sig
hal_1027 ura3_60min_-EDTA_CM_vs_NRC1-h1.sig
hal_1120 gamma3__0000gy-0000m
hal_1123 gamma3__0000gy-0030m
hal_1127 gamma3__0000gy-0120m
hal_1128 gamma3__0000gy-0240m
hal_1201 20060717_Cmyc_tbpF_rep2_0.219_vs_NRC-1d.sig
hal_1202 20060717_Cmyc_tbpF_rep2_0.393_vs_NRC-1d.sig
hal_1203 20060717_Cmyc_tbpF_rep2_0.801_vs_NRC-1d.sig
hal_1239 20060717_Cmyc_rep2_0.883_vs_NRC-1e.sig
hal_1279 Cmy_cspD2_1_mOD_vs_NRC-1d.sig
hal_1281 Cmy_cspD2_2_mOD_vs_NRC-1d.sig
hal_1283 Cmy_cspD1_1_mOD_vs_NRC-1d.sig
hal_1284 Cmy_cspD1_2_hOD_vs_NRC-1d.sig
hal_1286 20050726_Cmyc_tfbF_rep2_0.180_vs_NRC-1d.sig
hal_1287 20050726_Cmyc_tfbF_rep2_0.470_vs_NRC-1d.sig
hal_1288 20050726_Cmyc_tfbF_rep2_0.821_vs_NRC-1d.sig
hal_1289 20050726_Cmyc_tfbF_rep2_0.918_vs_NRC-1d.sig
hal_1298 20050726_Cmyc_tfbC_rep1_0.132_vs_NRC-1d.sig
hal_1299 20050726_Cmyc_tfbC_rep1_0.394_vs_NRC-1d.sig
hal_1300 20050726_Cmyc_tfbC_rep1_0.857_vs_NRC-1d.sig
hal_1301 20050726_Cmyc_tfbC_rep1_1.080_vs_NRC-1d.sig
hal_1302 20050726_Cmyc_tfbB_rep2_0.152_vs_NRC-1d.sig
hal_1304 20050726_Cmyc_tfbB_rep2_0.840_vs_NRC-1d.sig
hal_1305 20050726_Cmyc_tfbB_rep2_1.041_vs_NRC-1d.sig
hal_1306 20050726_Cmyc_tfbB_rep1_0.157_vs_NRC-1d.sig
hal_1307 20050726_Cmyc_tfbB_rep1_0.448_vs_NRC-1d.sig
hal_1309 20050726_Cmyc_tfbB_rep1_0.872_vs_NRC-1d.sig
hal_1336 20050620_Cmyc_tfbD_rep2_0.153_vs_NRC-1d.sig
hal_1345 20050620_Cmyc_rep1_0.207_vs_NRC-1d.sig
hal_1346 20050620_Cmyc_rep1_0.474_vs_NRC-1d.sig
hal_1347 20050620_Cmyc_rep1_1.052_vs_NRC-1d.sig
hal_1348 NRC-1e_vs_NRC-1h1.sig
hal_1352 H2O2_Recov._set_1_0mM_030min_vs_NRC-1d.sig
hal_1353 H2O2_Recov._set_1_0mM_040min_vs_NRC-1d.sig
hal_1354 H2O2_Recov._set_1_0mM_050min_vs_NRC-1d.sig
hal_1356 H2O2_Recov._set_1_0mM_120min_vs_NRC-1d.sig
hal_1357 KO_asnC.2_0.1825_vs_NRC-1_h1.sig
hal_1359 KO_asnC.2_0.6128_vs_NRC-1_h1.sig
hal_137 circadian_dark3_cycling_1440min_vs_NRC-1d.sig
hal_142 circadian_dark3_cycling_2160min_vs_NRC-1d.sig
hal_144 circadian_dark3_cycling_2340min_vs_NRC-1d.sig
hal_1448 sDura3D1179_pZn_d0.005mM_t+060m_vs_NRC-1h1.sig
hal_1449 sDura3D1179_pZn_d0.005mM_t+180m_vs_NRC-1h1.sig
hal_146 circadian_dark3_cycling_2700min_vs_NRC-1d.sig
hal_147 circadian_dark3_cycling_2880min_vs_NRC-1d.sig
hal_306 ZnSO4_set2_-005min_vs_NRC-1h1.sig
hal_307 ZnSO4_set2_000min_vs_NRC-1h1.sig
hal_308 ZnSO4_set2_005min_vs_NRC-1h1.sig
hal_309 ZnSO4_set2_010min_vs_NRC-1h1.sig
hal_310 ZnSO4_set2_015min_vs_NRC-1h1.sig
hal_312 ZnSO4_set2_025min_vs_NRC-1h1.sig
hal_313 ZnSO4_set2_030min_vs_NRC-1h1.sig
hal_314 ZnSO4_set2_040min_vs_NRC-1h1.sig
hal_315 ZnSO4_set2_060min_vs_NRC-1h1.sig
hal_316 ZnSO4_set2_080min_vs_NRC-1h1.sig
hal_317 ZnSO4_set2_120min_vs_NRC-1h1.sig
hal_318 ZnSO4_set2_160min_vs_NRC-1h1.sig
hal_412 ura3_Cu_1000um_a_vs_NRC-1d.sig
hal_418 ura3_Mn_1000um_a_vs_NRC-1d.sig
hal_421 ura3_Mn_1000um_b_vs_NRC-1d.sig
hal_434 ni__0000um_vs_NRC-1c
hal_509 ura3__HO_L_vs_NRC-1
hal_646 NRC1_H2O_0890_0.496_rep1_vs_NRC-1g.sig
hal_647 NRC1_H2O_1260_0.807_rep1_vs_NRC-1g.sig
hal_648 NRC1_H2O_1860_0.758_rep1_vs_NRC-1g.sig
hal_649 NRC1_H2O_2280_0.781_rep1_vs_NRC-1g.sig
hal_650 NRC1_H2O_2760_0.913_rep1_vs_NRC-1g.sig
hal_651 NRC1_H2O_3120_1.023_rep1_vs_NRC-1g.sig
hal_653 NRC1_Uracil_0890_0.420_rep2_vs_NRC-1g.sig
hal_655 NRC1_Uracil_1860_0.912_rep2_vs_NRC-1g.sig
hal_656 NRC1_Uracil_2280_0.881_rep2_vs_NRC-1g.sig
hal_657 NRC1_Uracil_2760_1.133_rep2_vs_NRC-1g.sig
hal_658 NRC1_Uracil_3120_1.296_rep2_vs_NRC-1g.sig
hal_688 NRC1_03960_0.409_rep2_vs_NRC-1g.sig
hal_691 NRC1_05400_0.786_rep2_vs_NRC-1g.sig
hal_693 NRC1_07020_1.318_rep2_vs_NRC-1g.sig
hal_695 NRC1_08460_3.840_rep2_vs_NRC-1g.sig
hal_698 NRC1_10980_4.935_rep2_vs_NRC-1g.sig
hal_71 circadian_drk8_cycling_0000min_vs_NRC-1e.sig
hal_741 H2O2_Recov._set_2_0mM_000min_vs_NRC-1f.sig
hal_742 H2O2_Recov._set_2_0mM_010min_vs_NRC-1f.sig
hal_743 H2O2_Recov._set_2_0mM_020min_vs_NRC-1f.sig
hal_744 H2O2_Recov._set_2_0mM_030min_vs_NRC-1f.sig
hal_746 H2O2_Recov._set_2_0mM_050min_vs_NRC-1f.sig
hal_747 H2O2_Recov._set_2_0mM_060min_vs_NRC-1f.sig
hal_748 H2O2_Recov._set_2_0mM_120min_vs_NRC-1f.sig
hal_749 H2O2_Recov._set_2_0mM_240min_vs_NRC-1f.sig
hal_786 1451_growth_t1_exp2_0.1OD_vs_NRC1f.sig
hal_790 ura3_growth_t2_exp2_0.5OD_vs_NRC1f.sig
hal_791 ura3_growth_t3_exp2_0.8OD_vs_NRC1f.sig
hal_794 ura3_-glu_a_OD0.6_vs_NRC1e.sig
hal_799 1451_growth_t4_exp2_0.5OD_vs_NRC1f.sig
hal_80 circadian_drk8_cycling_1620min_vs_NRC-1e.sig
hal_801 1451_growth_t2_exp3_0.2OD_vs_NRC1f.sig
hal_805 ura3_growth_t1_exp3_0.3OD_vs_NRC1f.sig
hal_808 ura3_growth_t4_exp3_1.2OD_vs_NRC1f.sig
hal_812 1451_+glu_b_OD0.2_vs_NRC1g.sig
hal_813 1451_+glu_b_OD0.6repl_vs_NRC1g.sig
hal_814 1451_+glu_b_OD1.2repl_vs_NRC1g.sig
hal_817 1451_-glu_a_OD1.2repl_vs_NRC1g.sig
hal_818 1451_-glu_b_OD0.6repl_vs_NRC1g.sig
hal_819 1451_-glu_b_OD1.2repl_vs_NRC1g.sig
hal_823 ura3_+glu_b_OD0.2_vs_NRC1g.sig
hal_824 ura3_+glu_b_OD0.6repl_vs_NRC1g.sig
hal_825 ura3_+glu_b_OD1.2repl_vs_NRC1g.sig
hal_827 ura3_-glu_a_OD0.6repl_vs_NRC1e.sig
hal_830 ura3_-glu_b_OD0.6repl_vs_NRC1g.sig
hal_831 ura3_-glu_b_OD1.2repl_vs_NRC1g.sig
hal_86 circadian_drk8_cycling_2700min_vs_NRC-1e.sig
hal_860 1451_growth_t1exp1_0.2OD_vs_NRC1e.sig
hal_861 1451_growth_t2exp1_0.3OD_vs_NRC1e.sig
hal_864 ura3_growth_t3exp1_0.8OD_vs_NRC1e.sig
hal_88 circadian_drk8_cycling_3060min_vs_NRC-1e.sig
hal_89 circadian_drk8_cycling_3240min_vs_NRC-1e.sig
hal_914 H2O2_Const._set_2_25mM_000min_vs_NRC-1f.sig
hal_915 H2O2_Const._set_2_25mM_030min_vs_NRC-1f.sig
hal_917 H2O2_Const._set_2_25mM_120min_vs_NRC-1f.sig
hal_918 H2O2_Const._set_2_25mM_240min_vs_NRC-1f.sig
hal_956 PQ_Const._set_1_4mM_000min_vs_NRC-1f.sig
hal_959 PQ_Const._set_1_4mM_120min_vs_NRC-1f.sig
hal_960 PQ_Const._set_1_4mM_240min_vs_NRC-1f.sig
hal_992 idr1_60min_1mM_EDTA_vs_NRC1-h1.sig

De novo detected cis-regulatory motifs

CRM ID eval PSSM
hal_24146_1 0.0000
hal_24146_2 0.0350

GREs assigned to hal_24146

GRE ID PSSM
hal_0
hal_90

Corems associated with hal_24146

Corem
hc11422
hc12990
hc14574
hc14757
hc1767
hc2651
hc2838
hc3377
hc3680
hc38821
hc4678
hc468