hal_28495 Co-expression

Genes in hal_28495

Organism Gene name Common name Accession Description Start Stop Strand Chromosome
Halobacterium salinarum sp. NRC-1 VNG0430H VNG0430H NP_279498.1 Vng0430h 333338 332688 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0846C VNG0846C NP_279816.1 Vng0846c 640617 642092 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0873G ykhA NP_279836.1 acyl-CoA hydrolase 659707 659240 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1112H VNG1112H NP_280024.1 Vng1112h 849289 849699 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1283H VNG1283H NP_280154.1 Vng1283h 962319 962119 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1284G trkH1 NP_280155.1 TRK potassium uptake system protein 963932 962319 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1285G trh2 NP_280156.1 transcription regulator 964770 964009 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1428G htlA NP_280262.1 Htr-like protein 1062508 1061360 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1431C VNG1431C NP_280264.1 Vng1431c 1063672 1064343 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1448H VNG1448H NP_280275.1 Vng1448h 1073392 1073153 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1450G yfkN NP_280276.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase 1073658 1074833 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1505G htr10 NP_280321.1 Htr10 transducer 1118569 1117100 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1508C VNG1508C NP_280323.1 Vng1508c 1121874 1119763 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1859G deoC NP_280582.1 deoxyribose-phosphate aldolase 1374390 1375028 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1957G tgtA2 NP_280658.1 archaeosine tRNA-ribosyltransferase 1445883 1444126 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1959G tgtA1 NP_280659.1 archaeosine tRNA-ribosyltransferase 1447422 1445947 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1992G pgi NP_280684.1 peroxidase / catalase 1471603 1472883 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2475C VNG2475C NP_281069.1 Vng2475c 1852017 1853057 + NC_002607.1

Conditions in hal_28495

Condition ID Condition Name
hal_1011 idr1_60min_-EDTA_CM_vs_NRC1-h1.sig
hal_1016 sirR_0min_-EDTA_CM_vs_NRC1-h1.sig
hal_1019 sirR_60min_-EDTA_CM_vs_NRC1-h1.sig
hal_1024 ura3_0min_-EDTA_CM_vs_NRC1-h1.sig
hal_1025 ura3_20min_-EDTA_CM_vs_NRC1-h1.sig
hal_1120 gamma3__0000gy-0000m
hal_1121 gamma3__0000gy-0010m
hal_1122 gamma3__0000gy-0020m
hal_1126 gamma3__0000gy-0060m
hal_1127 gamma3__0000gy-0120m
hal_1203 20060717_Cmyc_tbpF_rep2_0.801_vs_NRC-1d.sig
hal_1251 20060308_KO_tfbD_rep1_0.190_vs_NRC-1e.sig
hal_1252 20060308_KO_tfbD_rep1_0.424_vs_NRC-1e.sig
hal_1253 20060308_KO_tfbD_rep1_0.876_vs_NRC-1e.sig
hal_1278 Cmy_cspD2_1_hOD_vs_NRC-1d.sig
hal_1280 Cmy_cspD2_2_hOD_vs_NRC-1d.sig
hal_1282 Cmy_cspD1_1_hOD_vs_NRC-1d.sig
hal_1283 Cmy_cspD1_1_mOD_vs_NRC-1d.sig
hal_1284 Cmy_cspD1_2_hOD_vs_NRC-1d.sig
hal_1285 Cmy_cspD1_2_mOD_vs_NRC-1d.sig
hal_1287 20050726_Cmyc_tfbF_rep2_0.470_vs_NRC-1d.sig
hal_1298 20050726_Cmyc_tfbC_rep1_0.132_vs_NRC-1d.sig
hal_1300 20050726_Cmyc_tfbC_rep1_0.857_vs_NRC-1d.sig
hal_1336 20050620_Cmyc_tfbD_rep2_0.153_vs_NRC-1d.sig
hal_1338 20050620_Cmyc_tfbD_rep2_0.922_vs_NRC-1d.sig
hal_1346 20050620_Cmyc_rep1_0.474_vs_NRC-1d.sig
hal_1348 NRC-1e_vs_NRC-1h1.sig
hal_1349 H2O2_Recov._set_1_0mM_000min_vs_NRC-1d.sig
hal_1351 H2O2_Recov._set_1_0mM_020min_vs_NRC-1d.sig
hal_1352 H2O2_Recov._set_1_0mM_030min_vs_NRC-1d.sig
hal_1354 H2O2_Recov._set_1_0mM_050min_vs_NRC-1d.sig
hal_1355 H2O2_Recov._set_1_0mM_060min_vs_NRC-1d.sig
hal_1357 KO_asnC.2_0.1825_vs_NRC-1_h1.sig
hal_136 circadian_dark3_cycling_1380min_vs_NRC-1d.sig
hal_1360 KO_asnC.2_1.3133_vs_NRC-1_h1.sig
hal_138 circadian_dark3_cycling_1500min_vs_NRC-1d.sig
hal_140 circadian_dark3_cycling_1800min_vs_NRC-1d.sig
hal_142 circadian_dark3_cycling_2160min_vs_NRC-1d.sig
hal_143 circadian_dark3_cycling_2220min_vs_NRC-1d.sig
hal_144 circadian_dark3_cycling_2340min_vs_NRC-1d.sig
hal_1446 sDura3D1179_pZn_d0.005mM_t+015m_vs_NRC-1h1.sig
hal_1448 sDura3D1179_pZn_d0.005mM_t+060m_vs_NRC-1h1.sig
hal_1449 sDura3D1179_pZn_d0.005mM_t+180m_vs_NRC-1h1.sig
hal_145 circadian_dark3_cycling_2520min_vs_NRC-1d.sig
hal_146 circadian_dark3_cycling_2700min_vs_NRC-1d.sig
hal_147 circadian_dark3_cycling_2880min_vs_NRC-1d.sig
hal_306 ZnSO4_set2_-005min_vs_NRC-1h1.sig
hal_307 ZnSO4_set2_000min_vs_NRC-1h1.sig
hal_308 ZnSO4_set2_005min_vs_NRC-1h1.sig
hal_309 ZnSO4_set2_010min_vs_NRC-1h1.sig
hal_310 ZnSO4_set2_015min_vs_NRC-1h1.sig
hal_311 ZnSO4_set2_020min_vs_NRC-1h1.sig
hal_312 ZnSO4_set2_025min_vs_NRC-1h1.sig
hal_313 ZnSO4_set2_030min_vs_NRC-1h1.sig
hal_319 ZnSO4_set2_320min_vs_NRC-1h1.sig
hal_408 ura3_0a_vs_NRC-1d.sig
hal_409 ura3_0b_vs_NRC-1d.sig
hal_410 ura3_Cu_0700um_a_vs_NRC-1d.sig
hal_411 ura3_Cu_0850um_a_vs_NRC-1d.sig
hal_413 ura3_Cu_0700um_b_vs_NRC-1d.sig
hal_417 ura3_Mn_1500um_a_vs_NRC-1d.sig
hal_418 ura3_Mn_1000um_a_vs_NRC-1d.sig
hal_420 ura3_Mn_1500um_b_vs_NRC-1d.sig
hal_434 ni__0000um_vs_NRC-1c
hal_435 ni__0500um_vs_NRC-1c
hal_437 ni__1500um_vs_NRC-1c
hal_457 ura3_40min_+Fe_vs_NRC1-h1.sig
hal_510 ura3__LO_D_vs_NRC-1
hal_650 NRC1_H2O_2760_0.913_rep1_vs_NRC-1g.sig
hal_654 NRC1_Uracil_1260_0.812_rep2_vs_NRC-1g.sig
hal_687 NRC1_03720_0.234_rep2_vs_NRC-1g.sig
hal_689 NRC1_04320_0.578_rep2_vs_NRC-1g.sig
hal_690 NRC1_04476_0.715_rep2_vs_NRC-1g.sig
hal_694 NRC1_07740_2.681_rep2_vs_NRC-1g.sig
hal_695 NRC1_08460_3.840_rep2_vs_NRC-1g.sig
hal_696 NRC1_09540_4.690_rep2_vs_NRC-1g.sig
hal_697 NRC1_10260_4.540_rep2_vs_NRC-1g.sig
hal_698 NRC1_10980_4.935_rep2_vs_NRC-1g.sig
hal_699 NRC1_11700_5.730_rep2_vs_NRC-1g.sig
hal_71 circadian_drk8_cycling_0000min_vs_NRC-1e.sig
hal_72 circadian_drk8_cycling_0180min_vs_NRC-1e.sig
hal_74 circadian_drk8_cycling_0540min_vs_NRC-1e.sig
hal_741 H2O2_Recov._set_2_0mM_000min_vs_NRC-1f.sig
hal_745 H2O2_Recov._set_2_0mM_040min_vs_NRC-1f.sig
hal_75 circadian_drk8_cycling_0720min_vs_NRC-1e.sig
hal_76 circadian_drk8_cycling_0900min_vs_NRC-1e.sig
hal_787 1451_growth_t2_exp2_0.2OD_vs_NRC1f.sig
hal_788 1451_growth_t3_exp2_0.3OD_vs_NRC1f.sig
hal_789 ura3_growth_t1_exp2_0.3OD_vs_NRC1f.sig
hal_79 circadian_drk8_cycling_1440min_vs_NRC-1e.sig
hal_790 ura3_growth_t2_exp2_0.5OD_vs_NRC1f.sig
hal_793 ura3_+glu_a_OD0.6_vs_NRC1e.sig
hal_794 ura3_-glu_a_OD0.6_vs_NRC1e.sig
hal_797 ura3_+glu_a_OD1.2_vs_NRC1e.sig
hal_798 ura3_-glu_a_OD1.2_vs_NRC1e.sig
hal_80 circadian_drk8_cycling_1620min_vs_NRC-1e.sig
hal_800 1451_growth_t1_exp3_0.1OD_vs_NRC1f.sig
hal_801 1451_growth_t2_exp3_0.2OD_vs_NRC1f.sig
hal_802 1451_growth_t3_exp3_0.3OD_vs_NRC1f.sig
hal_803 1451_growth_t4_exp3_0.6OD_vs_NRC1f.sig
hal_804 ura3_growth_t4_exp2_1.2OD_vs_NRC1f.sig
hal_806 ura3_growth_t2_exp3_0.5OD_vs_NRC1f.sig
hal_807 ura3_growth_t3_exp3_0.8OD_vs_NRC1f.sig
hal_808 ura3_growth_t4_exp3_1.2OD_vs_NRC1f.sig
hal_809 1451_+glu_a_OD0.2_vs_NRC1e.sig
hal_810 1451_+glu_a_OD0.6repl_vs_NRC1e.sig
hal_811 1451_+glu_a_OD1.2repl_vs_NRC1e.sig
hal_813 1451_+glu_b_OD0.6repl_vs_NRC1g.sig
hal_814 1451_+glu_b_OD1.2repl_vs_NRC1g.sig
hal_816 1451_-glu_a_OD0.6repl_vs_NRC1e.sig
hal_817 1451_-glu_a_OD1.2repl_vs_NRC1g.sig
hal_820 ura3_+glu_a_OD0.2_vs_NRC1e.sig
hal_821 ura3_+glu_a_OD0.6repl_vs_NRC1e.sig
hal_828 ura3_-glu_a_OD1.2repl_vs_NRC1e.sig
hal_830 ura3_-glu_b_OD0.6repl_vs_NRC1g.sig
hal_84 circadian_drk8_cycling_2340min_vs_NRC-1e.sig
hal_85 circadian_drk8_cycling_2520min_vs_NRC-1e.sig
hal_861 1451_growth_t2exp1_0.3OD_vs_NRC1e.sig
hal_863 ura3_growth_t2exp1_0.5OD_vs_NRC1e.sig
hal_914 H2O2_Const._set_2_25mM_000min_vs_NRC-1f.sig
hal_915 H2O2_Const._set_2_25mM_030min_vs_NRC-1f.sig
hal_958 PQ_Const._set_1_4mM_060min_vs_NRC-1f.sig
hal_959 PQ_Const._set_1_4mM_120min_vs_NRC-1f.sig
hal_983 ura3_40min_1mM_EDTA_vs_NRC1-h1.sig
hal_991 idr1_40min_1mM_EDTA_vs_NRC1-h1.sig

De novo detected cis-regulatory motifs

CRM ID eval PSSM
hal_28495_1 0.0300
hal_28495_2 2.2000

GREs assigned to hal_28495

GRE ID PSSM
hal_274
hal_0

Corems associated with hal_28495

Corem
hc795