hal_9108 Co-expression

Genes in hal_9108

Organism Gene name Common name Accession Description Start Stop Strand Chromosome
Halobacterium salinarum sp. NRC-1 VNG0151C VNG0151C NP_279290.1 Vng0151c 123839 123558 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0335G gptA1 NP_279429.1 purine phosphoribosyltransferase 264253 264945 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0447H VNG0447H NP_279510.1 Vng0447h 345117 343909 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0574C VNG0574C NP_279609.1 Vng0574c 442210 442467 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0718C VNG0718C NP_279719.1 Vng0718c 542150 541473 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG0719G araL NP_279720.1 unknown L-arabinose operon protein 542178 543044 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1182H VNG1182H NP_280077.1 Vng1182h 890603 891091 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1183H VNG1183H NP_280079.1 Vng1183h 892578 892327 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1184G 0 0 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1187G pan1 NP_280081.1 membrane protein 893923 895062 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1188G hcpD NP_280082.1 halocyanin precursor-like 895069 895686 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1490H VNG1490H NP_280311.1 Vng1490h 1107155 1107559 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG1626C VNG1626C NP_280407.1 Vng1626c 1212650 1213414 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2028H VNG2028H NP_280711.1 Vng2028h 1498297 1498662 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2044H VNG2044H NP_280723.1 Vng2044h 1506779 1506498 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2059H VNG2059H NP_280732.1 Vng2059h 1512177 1512983 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2191H VNG2191H NP_280845.1 Vng2191h 1624827 1624252 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2197H VNG2197H NP_280849.1 Vng2197h 1628164 1628355 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2199H VNG2199H NP_280850.1 Vng2199h 1628491 1629180 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2201G cpx NP_280851.1 heavy-metal transporting CPx-type ATPase 1629182 1631587 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2285C VNG2285C NP_280919.1 Vng2285c 1703100 1702444 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2397G cysA NP_281008.1 sulfate transport system ATP-binding protein 1799212 1800243 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2413H VNG2413H NP_281020.1 Vng2413h 1809604 1809086 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2414H VNG2414H NP_281021.1 Vng2414h 1809646 1810137 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2415H VNG2415H NP_281022.1 Vng2415h 1810134 1810406 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2638G bchP NP_281191.1 geranylgeranyl hydrogenase 1975213 1976295 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2647G vacB NP_281200.1 ribonuclease II family protein 1982832 1984121 + NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG2673H VNG2673H NP_281217.1 Vng2673h 2006309 2006199 - NC_002607.1
Halobacterium salinarum sp. NRC-1 VNG5053H 0 0 + NC_002607.1

Conditions in hal_9108

Condition ID Condition Name
hal_1024 ura3_0min_-EDTA_CM_vs_NRC1-h1.sig
hal_1032 KO_trh6.2_0.1677_vs_NRC-1_h1.sig
hal_1035 KO_trh6.2_0.838_vs_NRC-1_h1.sig
hal_1092 o2_set2_L_005_vs_NRC-1d.sig
hal_1093 o2_set2_L_010_vs_NRC-1d.sig
hal_1097 o2_set2_L_090_vs_NRC-1d.sig
hal_1098 o2_set2_L_135_vs_NRC-1d.sig
hal_1100 o2_set2_L_270_vs_NRC-1d.sig
hal_1104 o2_set3_0005_min_HO2_vs_NRC1f.sig
hal_1106 o2_set3_0020_min_HO2_vs_NRC1f.sig
hal_1107 o2_set3_0030_min_HO2_vs_NRC1f.sig
hal_1108 o2_set3_0045_min_HO2_vs_NRC1f.sig
hal_1109 o2_set3_0060_min_HO2_vs_NRC1f.sig
hal_1110 o2_set3_0090_min_HO2_vs_NRC1f.sig
hal_1111 o2_set3_0120_min_HO2_vs_NRC1f.sig
hal_1112 o2_set3_0180_min_HO2_vs_NRC1f.sig
hal_1113 o2_set3_0240_min_HO2_vs_NRC1f.sig
hal_1116 o2_set3_0420_min_HO2_vs_NRC1f.sig
hal_1118 o2_set3_0600_min_HO2_vs_NRC1f.sig
hal_1119 o2_set3_0660_min_HO2_vs_NRC1f.sig
hal_1183 20060818_KO_tfbA_rep2_0.208_vs_NRC-1e.sig
hal_1213 20060717_Cmyc_tbpD_rep2_0.185_vs_NRC-1d.sig
hal_1251 20060308_KO_tfbD_rep1_0.190_vs_NRC-1e.sig
hal_1252 20060308_KO_tfbD_rep1_0.424_vs_NRC-1e.sig
hal_1266 20060308_KO_tbpC_rep2_0.181_vs_NRC-1e.sig
hal_1267 20060308_KO_tbpC_rep2_0.419_vs_NRC-1e.sig
hal_1278 Cmy_cspD2_1_hOD_vs_NRC-1d.sig
hal_1279 Cmy_cspD2_1_mOD_vs_NRC-1d.sig
hal_1280 Cmy_cspD2_2_hOD_vs_NRC-1d.sig
hal_1281 Cmy_cspD2_2_mOD_vs_NRC-1d.sig
hal_1282 Cmy_cspD1_1_hOD_vs_NRC-1d.sig
hal_1283 Cmy_cspD1_1_mOD_vs_NRC-1d.sig
hal_1285 Cmy_cspD1_2_mOD_vs_NRC-1d.sig
hal_1319 20050620_NRC1_rep2_0.505_vs_NRC-1d.sig
hal_1320 20050620_NRC1_rep2_1.030_vs_NRC-1d.sig
hal_1331 20050620_Cmyc_tfbE_rep2_0.383_vs_NRC-1d.sig
hal_1348 NRC-1e_vs_NRC-1h1.sig
hal_1380 NRC-1.2_1.1065_vs_NRC-1_h1.sig
hal_1397 NRC-1_0.1779_vs_NRC-1_h1.sig
hal_1419 Dun_Supernat._005minb_vs_NRC-1g.sig
hal_1422 Dun_Supernat._040minb_vs_NRC-1g.sig
hal_1423 Dun_Supernat._080minb_vs_NRC-1g.sig
hal_1479 sDura3_pNULL_d0.000mM_t+180m_vs_NRC-1h1.sig
hal_1480 sDura3_pNULL_d0.000mM_t-015m_vs_NRC-1h1.sig
hal_357 Cu_vng149_KO_set1_040min_vs_NRC-1h1.sig
hal_368 Cu_vng700_KO_set2_-030min_vs_NRC-1h1.sig
hal_372 Cu_vng700_KO_set2_020min_vs_NRC-1h1.sig
hal_374 Cu_vng700_KO_set2_080min_vs_NRC-1h1.sig
hal_375 Cu_vng700_KO_set2_160min_vs_NRC-1h1.sig
hal_408 ura3_0a_vs_NRC-1d.sig
hal_409 ura3_0b_vs_NRC-1d.sig
hal_410 ura3_Cu_0700um_a_vs_NRC-1d.sig
hal_411 ura3_Cu_0850um_a_vs_NRC-1d.sig
hal_412 ura3_Cu_1000um_a_vs_NRC-1d.sig
hal_413 ura3_Cu_0700um_b_vs_NRC-1d.sig
hal_414 ura3_Cu_0850um_b_vs_NRC-1d.sig
hal_415 ura3_Cu_1000um_b_vs_NRC-1d.sig
hal_416 ura3_Mn_0800um_a_vs_NRC-1d.sig
hal_417 ura3_Mn_1500um_a_vs_NRC-1d.sig
hal_418 ura3_Mn_1000um_a_vs_NRC-1d.sig
hal_419 ura3_Mn_0800um_b_vs_NRC-1d.sig
hal_420 ura3_Mn_1500um_b_vs_NRC-1d.sig
hal_504 VNG0019H__HO_L_vs_NRC-1c
hal_506 VNG0019H__LO_L_vs_NRC-1c
hal_509 ura3__HO_L_vs_NRC-1
hal_551 NRC-1__HO_D_vs_NRC-1
hal_552 NRC-1__HO_L_vs_NRC-1
hal_554 NRC-1__LO_L_vs_NRC-1
hal_562 kinA2_I__LO_L_vs_NRC-1
hal_577 htlD__LO_D_vs_NRC-1
hal_616 NRC-1_vs_NRC-1c.sig
hal_617 NRC-1c_vs_NRC-1d.sig
hal_635 afsQ2__HO_L_vs_NRC-1
hal_686 NRC-1f_vs_NRC-1g.sig
hal_71 circadian_drk8_cycling_0000min_vs_NRC-1e.sig
hal_73 circadian_drk8_cycling_0360min_vs_NRC-1e.sig
hal_74 circadian_drk8_cycling_0540min_vs_NRC-1e.sig
hal_75 circadian_drk8_cycling_0720min_vs_NRC-1e.sig
hal_76 circadian_drk8_cycling_0900min_vs_NRC-1e.sig
hal_77 circadian_drk8_cycling_1080min_vs_NRC-1e.sig
hal_78 circadian_drk8_cycling_1260min_vs_NRC-1e.sig
hal_786 1451_growth_t1_exp2_0.1OD_vs_NRC1f.sig
hal_787 1451_growth_t2_exp2_0.2OD_vs_NRC1f.sig
hal_788 1451_growth_t3_exp2_0.3OD_vs_NRC1f.sig
hal_789 ura3_growth_t1_exp2_0.3OD_vs_NRC1f.sig
hal_79 circadian_drk8_cycling_1440min_vs_NRC-1e.sig
hal_795 1451_+glu_a_OD0.6_vs_NRC1e.sig
hal_797 ura3_+glu_a_OD1.2_vs_NRC1e.sig
hal_798 ura3_-glu_a_OD1.2_vs_NRC1e.sig
hal_799 1451_growth_t4_exp2_0.5OD_vs_NRC1f.sig
hal_80 circadian_drk8_cycling_1620min_vs_NRC-1e.sig
hal_801 1451_growth_t2_exp3_0.2OD_vs_NRC1f.sig
hal_802 1451_growth_t3_exp3_0.3OD_vs_NRC1f.sig
hal_803 1451_growth_t4_exp3_0.6OD_vs_NRC1f.sig
hal_804 ura3_growth_t4_exp2_1.2OD_vs_NRC1f.sig
hal_806 ura3_growth_t2_exp3_0.5OD_vs_NRC1f.sig
hal_81 circadian_drk8_cycling_1800min_vs_NRC-1e.sig
hal_811 1451_+glu_a_OD1.2repl_vs_NRC1e.sig
hal_813 1451_+glu_b_OD0.6repl_vs_NRC1g.sig
hal_814 1451_+glu_b_OD1.2repl_vs_NRC1g.sig
hal_816 1451_-glu_a_OD0.6repl_vs_NRC1e.sig
hal_817 1451_-glu_a_OD1.2repl_vs_NRC1g.sig
hal_818 1451_-glu_b_OD0.6repl_vs_NRC1g.sig
hal_819 1451_-glu_b_OD1.2repl_vs_NRC1g.sig
hal_82 circadian_drk8_cycling_1980min_vs_NRC-1e.sig
hal_823 ura3_+glu_b_OD0.2_vs_NRC1g.sig
hal_830 ura3_-glu_b_OD0.6repl_vs_NRC1g.sig
hal_84 circadian_drk8_cycling_2340min_vs_NRC-1e.sig
hal_848 PQ_Const._set_3_4mM_160min_vs_NRC-1h1.sig
hal_85 circadian_drk8_cycling_2520min_vs_NRC-1e.sig
hal_856 KO_ura3.2_0.1716_vs_NRC-1_h1.sig
hal_857 KO_ura3.2_0.3207_vs_NRC-1_h1.sig
hal_859 KO_ura3.2_0.5084_vs_NRC-1_h1.sig
hal_86 circadian_drk8_cycling_2700min_vs_NRC-1e.sig
hal_860 1451_growth_t1exp1_0.2OD_vs_NRC1e.sig
hal_861 1451_growth_t2exp1_0.3OD_vs_NRC1e.sig
hal_87 circadian_drk8_cycling_2880min_vs_NRC-1e.sig
hal_88 circadian_drk8_cycling_3060min_vs_NRC-1e.sig
hal_89 circadian_drk8_cycling_3240min_vs_NRC-1e.sig
hal_983 ura3_40min_1mM_EDTA_vs_NRC1-h1.sig
hal_984 ura3_60min_1mM_EDTA_vs_NRC1-h1.sig
hal_986 idr1-2_20min_1mM_EDTA_vs_NRC1-h1.sig
hal_987 idr1-2_40min_1mM_EDTA_vs_NRC1-h1.sig

De novo detected cis-regulatory motifs

CRM ID eval PSSM
hal_9108_1 0.0000
hal_9108_2 40.0000

GREs assigned to hal_9108

GRE ID PSSM
hal_0
hal_128

Corems associated with hal_9108

Corem
hc171