Regulator RutR

GREs

GRE ID PSSM Score
eco_146 0.0000000000000000
eco_255 0.0000190860798708

Corems

Corem ID GRE pval
ec523247 eco_146 0.0000005858083
ec523253 eco_146 0.0000001196376
ec523256 eco_146 0.0000000027348
ec523261 eco_146 0.0000035676340
ec523268 eco_146 0.0000001932061
ec523277 eco_146 0.0000000459599
ec526054 eco_146 0.0000001551736
ec528915 eco_146 0.0000002365764
ec533192 eco_146 0.0000000852157
ec513737 eco_255 0.0000000000929
ec515808 eco_255 0.0000000000000
ec515817 eco_255 0.0000069786020
ec523245 eco_255 0.0000000000000
ec523247 eco_255 0.0000121882400
ec523256 eco_255 0.0000000562179
ec526038 eco_255 0.0000000001025
ec526042 eco_255 0.0000000212032
ec526045 eco_255 0.0000000427814
ec526054 eco_255 0.0000000001318
ec526058 eco_255 0.0000000002627
ec526063 eco_255 0.0000089374250
ec526100 eco_255 0.0000005610911
ec533192 eco_255 0.0000007481444
ec547625 eco_255 0.0000028544730
ec547642 eco_255 0.0000035756560
ec547663 eco_255 0.0000579932400
ec547737 eco_255 0.0000002648659
ec547776 eco_255 0.0000066073200
ec547871 eco_255 0.0000276805800
ec547873 eco_255 0.0000003314112

Genes

Gene name Common name Description Start Stop Strand Chromosome GRE pval
b1006 ycdG putative transport protein 1069062 1067734 - NC_000913.2 eco_146 0.0000000000000
b0547 ybcN DLP12 prophage; predicted protein 571689 572144 + NC_000913.2 eco_146 0.0000017245590
b1337 abgB predicted peptidase, aminobenzoyl-glutamate utilization protein 1401279 1399834 - NC_000913.2 eco_146 0.0000019394350
b1339 abgR predicted DNA-binding transcriptional regulator 1402765 1403673 + NC_000913.2 eco_146 0.0000008876425
b1008 ycdI hypothetical protein 1070178 1069588 - NC_000913.2 eco_146 0.0000000605981
b1010 ycdK hypothetical protein 1071382 1070996 - NC_000913.2 eco_146 0.0000000000140
b1012 b1012 orf, hypothetical protein 1073234 1072086 - NC_000913.2 eco_146 0.0000000000126
b2010 dacD penicillin binding protein 6b 2080571 2079405 - NC_000913.2 eco_146 0.0000059977390
b2238 yfaH hypothetical protein 2347673 2347915 + NC_000913.2 eco_146 0.0000068643190
b1013 ycdC predicted DNA-binding transcriptional regulator 1073465 1074103 + NC_000913.2 eco_146 0.0000000000000
b0284 yagR predicted oxidoreductase with molybdenum-binding domain 300158 297960 - NC_000913.2 eco_146 0.0000006849364
b0823 ybiW predicted pyruvate formate lyase 861829 859397 - NC_000913.2 eco_255 0.0000046397070
b0934 ycbM putative transport system permease protein 994055 993264 - NC_000913.2 eco_255 0.0000000008978
b1006 ycdG putative transport protein 1069062 1067734 - NC_000913.2 eco_255 0.0000000025032
b1014 putA fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 1078105 1074143 - NC_000913.2 eco_255 0.0000005169304
b1155 ymfS e14 prophage; predicted protein 1207355 1207768 + NC_000913.2 eco_255 0.0000000178969
b1339 abgR predicted DNA-binding transcriptional regulator 1402765 1403673 + NC_000913.2 eco_255 0.0000189826300
b1421 trg methyl-accepting chemotaxis protein III, ribose and galactose sensor receptor 1490494 1492134 + NC_000913.2 eco_255 0.0000000358342
b1789 yeaL conserved inner membrane protein 1872376 1872822 + NC_000913.2 eco_255 0.0000052297520
b2549 yphG orf, hypothetical protein 2680767 2677486 - NC_000913.2 eco_255 0.0000000004160
b2887 ygfT putative oxidoreductase, Fe-S subun 3028953 3027034 - NC_000913.2 eco_255 0.0000001050777
b0310 ykgH predicted inner membrane protein 324588 323920 - NC_000913.2 eco_255 0.0000002991852
b0317 yahC predicted inner membrane protein 334246 333749 - NC_000913.2 eco_255 0.0000000001340
b0347 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase 367835 369499 + NC_000913.2 eco_255 0.0000002295373
b0513 ybbY putative transpor 539789 541090 + NC_000913.2 eco_255 0.0000000001413
b0533 sfmH predicted fimbrial-like adhesin protein 561559 562542 + NC_000913.2 eco_255 0.0000003781634
b0613 citG triphosphoribosyl-dephospho-CoA transferase 646732 645854 - NC_000913.2 eco_255 0.0000000060076
b0614 citX 2'-(5'-triphosphoribosyl)-3'-dephospho-CoA:apo- citrate lyase 647258 646707 - NC_000913.2 eco_255 0.0000005806999
b0616 citE citrate lyase beta chain (acyl lyase subunit) 649713 648805 - NC_000913.2 eco_255 0.0000000018317
b0618 citC citrate lyase synthetase (citrate (pro-3S)-lyase ligase 651079 650021 - NC_000913.2 eco_255 0.0000001200888
b0691 ybfG orf, hypothetical protein 715820 715170 - NC_000913.2 eco_255 0.0000023242520

Conditions

Condition ID Condition Name GRE pval
eco_10 8455 127 0.0492636400000
eco_11 Clean_ANA12 223 0.0499715500000
eco_110 GSM1380 127 0.0248646100000
eco_111 GSM18235 223 0.0208179700000
eco_112 GSM18247 127 0.0213279300000
eco_115 GSM18255 223 0.0246746300000
eco_120 GSM18263 127 0.0268243400000
eco_121 GSM18264 223 0.0122960500000
eco_123 GSM18279 127 0.0276029500000
eco_124 GSM18285 223 0.0176828000000
eco_128 GSM30821 127 0.0486537700000
eco_132 GSM37071 223 0.0284998400000
eco_133 GSM37075 223 0.0499962400000
eco_141 GSM63889 127 0.0495733200000
eco_142 GSM63892 127 0.0262096200000
eco_143 GSM63893 127 0.0138744500000
eco_145 GSM65626 127 0.0073965080000
eco_147 GSM65630 127 0.0497753300000
eco_150 GSM67656 127 0.0009745936000
eco_151 GSM73124 223 0.0488244400000
eco_151 GSM73124 127 0.0462584400000
eco_152 GSM73125 127 0.0244368800000
eco_159 GSM73145 127 0.0088984120000
eco_164 GSM73157 223 0.0127149100000
eco_165 GSM73158 127 0.0492327200000
eco_173 GSM73270 223 0.0481215500000
eco_182 GSM77343 223 0.0330547800000
eco_184 GSM77353 127 0.0277251900000
eco_186 GSM77357 223 0.0314222000000
eco_187 GSM7886 127 0.0049651420000
eco_19 Clean_DIAUX7 223 0.0040377450000
eco_19 Clean_DIAUX7 127 0.0441648700000
eco_193 GSM82548 127 0.0072715080000
eco_195 GSM82603 127 0.0197020500000
eco_204 GSM83071 127 0.0469368000000
eco_208 GSM88914 223 0.0100248200000
eco_21 Clean_H2O211 223 0.0136012600000
eco_210 GSM98717 127 0.0440340700000
eco_22 Clean_H2O22 223 0.0463933700000
eco_224 GSM99117 127 0.0188875700000
eco_225 GSM99119 223 0.0026021490000
eco_225 GSM99119 127 0.0141192800000
eco_227 GSM99122 223 0.0204450900000
eco_229 GSM99129 223 0.0260896500000
eco_230 GSM99132 223 0.0034284500000
eco_233 GSM99150 223 0.0225086900000
eco_235 GSM99159 127 0.0069805810000
eco_236 GSM99160 127 0.0447423200000
eco_237 GSM99164 223 0.0000064704690
eco_237 GSM99164 127 0.0040303550000
eco_238 GSM99167 223 0.0435988400000
eco_239 GSM99173 127 0.0188609100000
eco_240 GSM99181 127 0.0028808030000
eco_242 GSM99186 223 0.0318402200000
eco_243 GSM99189 127 0.0413581700000
eco_244 GSM99191 223 0.0159553400000
eco_246 GSM99197 223 0.0205325500000
eco_246 GSM99197 127 0.0068069530000
eco_248 GSM99205 223 0.0488748100000
eco_26 Clean_TGC14 127 0.0462876000000
eco_270 Clean_ANA3 223 0.0325464400000
eco_274 Clean_H2O26 223 0.0364177400000
eco_278 EC_GLU_WILD_C 127 0.0253980500000
eco_278 EC_GLU_WILD_C 223 0.0008897840000
eco_280 EC_GLY_GLYA_20_B 223 0.0173137200000
eco_285 EC_LAC_LA_20_C 223 0.0380146200000
eco_289 EC_LAC_LE_20_B 127 0.0028102660000
eco_29 crpfur 223 0.0310805700000
eco_299 GADXW_exp7 127 0.0265416600000
eco_3 1593 223 0.0435310400000
eco_300 GADXW_exp8 223 0.0068712620000
eco_300 GADXW_exp8 127 0.0234364400000
eco_302 GSM101231 223 0.0045374400000
eco_309 GSM101779 127 0.0290253800000
eco_31 EC_GLY_GLY1_20_C 127 0.0014888220000
eco_311 GSM106340 223 0.0153976500000
eco_312 GSM106504 223 0.0395832700000
eco_313 GSM106753 223 0.0091970930000
eco_32 EC_GLY_GLY1_44_A 127 0.0118501300000
eco_323 GSM118614 127 0.0421096900000
eco_324 GSM118619 127 0.0011106080000
eco_325 GSM118621 127 0.0492583300000
eco_326 GSM118623 127 0.0290603655000
eco_327 GSM1367 127 0.0460312800000
eco_329 GSM1374 127 0.0166391500000
eco_33 EC_GLY_GLY1_44_B 223 0.0002965906000
eco_33 EC_GLY_GLY1_44_B 127 0.0025768330000
eco_337 GSM18281 127 0.0289040900000
eco_337 GSM18281 223 0.0236551600000
eco_339 GSM23465 223 0.0057515110000
eco_34 EC_GLY_GLY2_20_A 223 0.0458123000000
eco_34 EC_GLY_GLY2_20_A 127 0.0130287300000
eco_343 GSM38549 223 0.0261321400000
eco_348 GSM65636 127 0.0140454100000
eco_349 GSM67648 223 0.0438298000000
eco_35 EC_GLY_GLYA_20_A 223 0.0378919100000
eco_35 EC_GLY_GLYA_20_A 127 0.0340181600000
eco_36 EC_GLY_GLYA_20_C 223 0.0137473200000
eco_36 EC_GLY_GLYA_20_C 127 0.0440045200000
eco_368 GSM8118 223 0.0023230140000
eco_368 GSM8118 127 0.0379268100000
eco_375 GSM82606 223 0.0325070100000
eco_379 GSM83073 127 0.0367092800000
eco_389 GSM99098 223 0.0394797500000
eco_392 GSM99114 223 0.0157346900000
eco_396 GSM99143 223 0.0005052452000
eco_400 GSM99157 223 0.0133899800000
eco_401 GSM99162 223 0.0343732600000
eco_402 GSM99166 223 0.0010772830000
eco_402 GSM99166 127 0.0290552000000
eco_403 GSM99172 223 0.0127304200000
eco_405 GSM99187 127 0.0283641900000
eco_406 GSM99192 127 0.0338897700000
eco_408 GSM99195 127 0.0383528700000
eco_410 GSM99204 223 0.0030287820000
eco_411 GSM99208 127 0.0316435700000
eco_411 GSM99208 223 0.0353000300000
eco_414 GSM99398 223 0.0354024900000
eco_419 1637 127 0.0390848500000
eco_42 EC_GLY_GLYD_20_C 127 0.0026041810000
eco_423 9395 127 0.0227168900000
eco_433 EC_LAC_L3_20_C 223 0.0067663110000
eco_433 EC_LAC_L3_20_C 127 0.0252988700000
eco_435 EC_LAC_LC_20_C 127 0.0128815100000
eco_436 EC_LAC_LE_20_A 223 0.0454949400000
eco_439 GADXW_exp1 127 0.0017340990000
eco_44 EC_LAC_L2_20_C 127 0.0093749970000
eco_440 GADXW_exp11 127 0.0071590220000
eco_442 GADXW_exp15 127 0.0083244300000
eco_445 GSM101768 127 0.0449069400000
eco_445 GSM101768 223 0.0486835200000
eco_45 EC_LAC_L2_60_B 223 0.0169781600000
eco_45 EC_LAC_L2_60_B 127 0.0477331100000
eco_46 EC_LAC_L2_60_C 127 0.0323839000000
eco_462 GSM23459 223 0.0129491100000
eco_465 GSM37068 223 0.0019952970000
eco_469 GSM38546 223 0.0016150300000
eco_47 EC_LAC_L3_60_A 127 0.0123539200000
eco_470 GSM38548 127 0.0083542410000
eco_471 GSM62198 223 0.0390305700000
eco_472 GSM63896 127 0.0198978900000
eco_473 GSM65588 223 0.0080735120000
eco_473 GSM65588 127 0.0020872800000
eco_482 GSM73123 127 0.0195488300000
eco_493 GSM77350 127 0.0476864200000
eco_50 EC_LAC_LB_20_B 127 0.0000000413093
eco_500 GSM88913 127 0.0287241400000
eco_501 GSM88915 223 0.0284780700000
eco_502 GSM98720 127 0.0257246300000
eco_503 GSM98725 127 0.0321218100000
eco_506 GSM99086 127 0.0131770200000
eco_509 GSM99099 223 0.0155155200000
eco_51 EC_LAC_LB_60_C 223 0.0012208090000
eco_511 GSM99104 127 0.0227811700000
eco_512 GSM99131 127 0.0310797600000
eco_519 GSM99194 223 0.0155447100000
eco_520 GSM99198 223 0.0293779200000
eco_520 GSM99198 127 0.0254232900000
eco_524 GSM99394 223 0.0263395600000
eco_525 HEATSHOCK_CH 223 0.0410094500000
eco_53 EC_LAC_LC_60_A 223 0.0073166530000
eco_542 EC_GLU_WILD_B 223 0.0449924900000
eco_543 EC_GLY_GLY1_20_B 127 0.0320296400000
eco_544 EC_GLY_GLY2_44_A 127 0.0393872000000
eco_55 EC_LAC_LE_60_A 127 0.0027853820000
eco_551 EC_LAC_LA_60_C 223 0.0245956200000
eco_551 EC_LAC_LA_60_C 127 0.0090992550000
eco_555 EC_LAC_LD_60_A 127 0.0003445648000
eco_559 E-MEXP-267-raw-data-495080239.txt 127 0.0187995600000
eco_562 GADXW_exp12 127 0.0143531100000
eco_564 GSM101780 127 0.0077982990000
eco_57 EC_LAC_WILD_E 127 0.0044572240000
eco_572 GSM1368 127 0.0047772800000
eco_577 GSM18287 127 0.0283817100000
eco_582 GSM63891 223 0.0111579400000
eco_584 GSM73121 127 0.0109923000000
eco_588 GSM77349 127 0.0277018900000
eco_588 GSM77349 223 0.0052849140000
eco_589 GSM77359 223 0.0012306470000
eco_589 GSM77359 127 0.0083799980000
eco_596 GSM83076 223 0.0027896550000
eco_599 GSM94003 223 0.0108561300000
eco_601 GSM98730 127 0.0063687180000
eco_605 GSM99130 127 0.0470553500000
eco_609 GSM99170 223 0.0352508000000
eco_610 GSM99174 127 0.0114087800000
eco_611 GSM99201 223 0.0033656440000
eco_613 GSM99207 223 0.0468304200000
eco_613 GSM99207 127 0.0149415700000
eco_616 1278 223 0.0447339900000
eco_625 EC_GLY_GLY1_44_C 223 0.0169139000000
eco_627 EC_GLY_GLY2_44_B 223 0.0105025100000
eco_628 EC_GLY_GLYB_20_A 223 0.0080951430000
eco_629 EC_GLY_GLYC_20_A 223 0.0027641360000
eco_63 E-MEXP-244-raw-data-396455082.txt 223 0.0221596800000
eco_632 EC_GLY_WILD_B 223 0.0130193600000
eco_632 EC_GLY_WILD_B 127 0.0130193600000
eco_633 EC_GLY_WILD_E 223 0.0146033600000
eco_635 EC_LAC_L3_20_B 127 0.0183026400000
eco_635 EC_LAC_L3_20_B 223 0.0081917300000
eco_636 EC_LAC_L3_60_B 127 0.0220329800000
eco_638 EC_LAC_LB_60_B 223 0.0299394600000
eco_639 EC_LAC_LC_60_B 127 0.0052907030000
eco_639 EC_LAC_LC_60_B 223 0.0299505900000
eco_643 GSM101766 127 0.0284807500000
eco_650 GSM1376 127 0.0294025200000
eco_650 GSM1376 223 0.0092464620000
eco_651 GSM18236 223 0.0042941990000
eco_652 GSM18250 223 0.0068893450000
eco_654 GSM18276 223 0.0135823900000
eco_656 GSM18289 223 0.0094444230000
eco_661 GSM63885 127 0.0440051600000
eco_661 GSM63885 223 0.0152067800000
eco_664 GSM65600 223 0.0384760700000
eco_67 E-MEXP-267-raw-data-495080207.txt 223 0.0077607910000
eco_674 GSM73267 223 0.0418194800000
eco_677 GSM73280 127 0.0316439500000
eco_679 GSM8112 127 0.0496079400000
eco_68 E-MEXP-267-raw-data-495080255.txt 127 0.0366415300000
eco_689 GSM98729 223 0.0470711100000
eco_690 GSM99082 223 0.0203516800000
eco_696 GSM99116 127 0.0292093600000
eco_697 GSM99144 223 0.0332966300000
eco_70 GADXW_exp13 127 0.0213597800000
eco_701 GSM99190 127 0.0010278490000
eco_701 GSM99190 223 0.0085005200000
eco_703 GSM99216 223 0.0002667540000
eco_703 GSM99216 127 0.0094618010000
eco_71 GADXW_exp6 127 0.0012340470000
eco_71 GADXW_exp6 223 0.0140949100000
eco_711 EC_GLY_GLYE_20_C 127 0.0017493270000
eco_712 EC_LAC_LA_20_A 127 0.0449049600000
eco_714 EC_LAC_WILD_B 127 0.0291584500000
eco_716 GADXW_exp2 127 0.0273499000000
eco_717 GADXW_exp4 127 0.0378475400000
eco_717 GADXW_exp4 223 0.0423601600000
eco_720 GSM1369 223 0.0318202000000
eco_721 GSM18265 127 0.0264123700000
eco_721 GSM18265 223 0.0302609300000
eco_724 GSM35419 127 0.0006908531000
eco_727 GSM65589 223 0.0450176300000
eco_727 GSM65589 127 0.0420920100000
eco_728 GSM65597 223 0.0371434500000
eco_730 GSM67655 223 0.0078580400000
eco_730 GSM67655 127 0.0268423500000
eco_733 GSM73142 127 0.0452443600000
eco_741 GSM89486 223 0.0112108300000
eco_747 GSM99120 223 0.0495975800000
eco_748 GSM99163 223 0.0363709800000
eco_749 GSM99165 223 0.0063782380000
eco_750 GSM99178 223 0.0103322700000
eco_751 GSM99180 127 0.0395371300000
eco_752 GSM99182 127 0.0000574588000
eco_755 Clean_DIAUX2 127 0.0026685790000
eco_757 EC_GLY_GLYC_44_B 127 0.0299588900000
eco_758 EC_GLY_GLYD_44_C 223 0.0410483100000
eco_759 EC_GLY_WILD_C 127 0.0114031200000
eco_760 EC_LAC_LD_60_B 223 0.0468847700000
eco_761 EC_LAC_WILD_A 223 0.0350650600000
eco_762 GADXW_exp10 127 0.0099973350000
eco_762 GADXW_exp10 223 0.0367455800000
eco_763 GADXW_exp5 127 0.0000841434800
eco_766 GSM116031 223 0.0192337200000
eco_767 GSM18254 127 0.0346085800000
eco_767 GSM18254 223 0.0112345000000
eco_770 GSM37073 127 0.0272375600000
eco_776 GSM77342 127 0.0089518250000
eco_780 GSM99147 127 0.0349030800000
eco_781 GSM99185 223 0.0072713500000
eco_781 GSM99185 127 0.0001020264000
eco_786 EC_LAC_WILD_C 127 0.0009535158000
eco_796 GSM63886 127 0.0168368200000
eco_796 GSM63886 223 0.0154537600000
eco_801 GSM82547 127 0.0319307500000
eco_805 GSM99153 223 0.0148462600000
eco_805 GSM99153 127 0.0164038000000
eco_806 GSM99175 127 0.0442334400000
eco_81 GSM101773 127 0.0077061840000
eco_812 EC_GLY_GLYA_44_A 223 0.0480130500000
eco_812 EC_GLY_GLYA_44_A 127 0.0453223600000
eco_813 EC_GLY_GLYB_20_C 127 0.0363039200000
eco_814 EC_GLY_WILD_A 223 0.0151459000000
eco_820 GSM89488 127 0.0371731700000
eco_823 EC_GLY_GLYB_44_B 223 0.0222114000000
eco_823 EC_GLY_GLYB_44_B 127 0.0275557100000
eco_826 GSM106756 223 0.0201759300000
eco_83 GSM106341 223 0.0216455400000
eco_834 GSM99212 223 0.0159055200000
eco_834 GSM99212 127 0.0006499799000
eco_835 EC_GLY_GLYB_20_B 127 0.0132393300000
eco_835 EC_GLY_GLYB_20_B 223 0.0031721390000
eco_836 EC_GLY_GLYD_20_B 127 0.0126508300000
eco_836 EC_GLY_GLYD_20_B 223 0.0000001708335
eco_839 GSM1370 127 0.0335781600000
eco_843 GSM99126 223 0.0117263400000
eco_848 GSM99639 223 0.0430669800000
eco_849 GSM120197 223 0.0146532500000
eco_856 Clean_ANA20 223 0.0318605500000
eco_857 EC_LAC_LC_60_C 223 0.0026471370000
eco_859 GSM18280 127 0.0040514550000
eco_859 GSM18280 223 0.0133458600000
eco_868 GSM73286 223 0.0059148200000
eco_88 GSM111417 223 0.0293908800000
eco_89 GSM111420 127 0.0040461970000
eco_99 GSM118607 127 0.0268313600000