format-version: 1.2 date: 13:01:2012 18:24 saved-by: abrooks auto-generated-by: OBO-Edit 2.1 default-namespace: Halo_env [Term] id: ID:0000000 name: environmental state creation_date: 2011-03-02T02:00:55Z [Term] id: ID:0000001 name: genetic state created_by: abrooks creation_date: 2011-03-02T02:01:41Z [Term] id: ID:0000002 name: knock out is_a: ID:0000001 ! genetic state created_by: abrooks creation_date: 2011-03-02T02:03:35Z [Term] id: ID:0000003 name: over expression is_a: ID:0000001 ! genetic state created_by: abrooks creation_date: 2011-03-02T02:04:17Z [Term] id: ID:0000004 name: cellular state def: "Relates to internal conditions of cell. No human intervention." [] is_a: ID:0000000 ! environmental state created_by: abrooks creation_date: 2011-03-02T02:04:49Z [Term] id: ID:0000005 name: environmental perturbation is_a: ID:0000000 ! environmental state created_by: abrooks creation_date: 2011-03-02T02:05:12Z [Term] id: ID:0000006 name: experimental state created_by: abrooks creation_date: 2011-03-02T02:05:51Z [Term] id: ID:0000007 name: reference batch is_a: ID:0000006 ! experimental state created_by: abrooks creation_date: 2011-03-02T02:06:59Z [Term] id: ID:0000008 name: sampling is_a: ID:0000006 ! experimental state created_by: abrooks creation_date: 2011-03-02T02:07:50Z [Term] id: ID:0000009 name: time course is_a: ID:0000008 ! sampling created_by: abrooks creation_date: 2011-03-02T02:08:22Z [Term] id: ID:0000010 name: static is_a: ID:0000008 ! sampling created_by: abrooks creation_date: 2011-03-02T02:08:41Z [Term] id: ID:0000011 name: culturing method is_a: ID:0000006 ! experimental state created_by: abrooks creation_date: 2011-03-02T02:12:24Z [Term] id: ID:0000012 name: growth phase def: "Defined by optical density measured at 600 nm." [] is_a: ID:0000004 ! cellular state created_by: abrooks creation_date: 2011-12-30T11:56:43Z [Term] id: ID:0000013 name: saturation phase def: "optical density > 0.8." [] synonym: "late-log" RELATED [] synonym: "late-phase" RELATED [] synonym: "saturation" RELATED [] is_a: ID:0000012 ! growth phase created_by: abrooks creation_date: 2011-12-30T11:58:19Z [Term] id: ID:0000014 name: exponential phase def: "0.2 > OD < 0.8." [] synonym: "mid-log" RELATED [] is_a: ID:0000012 ! growth phase created_by: abrooks creation_date: 2011-12-30T12:06:35Z [Term] id: ID:0000015 name: lag phase def: "OD < 0.2." [] is_a: ID:0000012 ! growth phase created_by: abrooks creation_date: 2011-12-30T12:08:52Z [Term] id: ID:0000016 name: early-exponential phase def: "0.2 >= OD < 0.4." [] is_a: ID:0000014 ! exponential phase created_by: abrooks creation_date: 2011-12-30T01:48:01Z [Term] id: ID:0000017 name: mid-exponential phase def: "0.4 >= OD < 0.6." [] is_a: ID:0000014 ! exponential phase created_by: abrooks creation_date: 2011-12-30T01:48:01Z [Term] id: ID:0000018 name: late-exponential phase def: "0.6 >= OD < 0.8." [] is_a: ID:0000014 ! exponential phase created_by: abrooks creation_date: 2011-12-30T01:48:01Z [Term] id: ID:0000019 name: ura3 ko def: "Knockout of ura3. Parent deletion strain. Used as a selective marker." [] is_a: ID:0000002 ! knock out created_by: abrooks creation_date: 2011-12-30T01:51:02Z [Term] id: ID:0000020 name: tf ko def: "Knock out of a transcription factor." [] is_a: ID:0000002 ! knock out created_by: abrooks creation_date: 2011-12-30T01:51:02Z [Term] id: ID:0000021 name: tg ko def: "Knockout of non-transcription factor gene." [] is_a: ID:0000002 ! knock out created_by: abrooks creation_date: 2011-12-30T01:51:02Z [Term] id: ID:0000022 name: low atp level def: "atp (mol/L) < 1.0." [] is_a: ID:0000052 ! atp level created_by: abrooks creation_date: 2012-01-03T10:00:47Z [Term] id: ID:0000023 name: unknown is_a: ID:0000007 ! reference batch created_by: abrooks creation_date: 2011-12-30T02:01:54Z [Term] id: ID:0000024 name: reference batch a is_a: ID:0000007 ! reference batch created_by: abrooks creation_date: 2011-12-30T02:01:54Z [Term] id: ID:0000025 name: reference batch b is_a: ID:0000007 ! reference batch created_by: abrooks creation_date: 2011-12-30T02:01:54Z [Term] id: ID:0000026 name: reference batch c is_a: ID:0000007 ! reference batch created_by: abrooks creation_date: 2011-12-30T02:01:54Z [Term] id: ID:0000027 name: reference batch d is_a: ID:0000007 ! reference batch created_by: abrooks creation_date: 2011-12-30T02:01:54Z [Term] id: ID:0000028 name: reference batch e is_a: ID:0000007 ! reference batch created_by: abrooks creation_date: 2011-12-30T02:01:54Z [Term] id: ID:0000029 name: reference batch f is_a: ID:0000007 ! reference batch created_by: abrooks creation_date: 2011-12-30T02:01:54Z [Term] id: ID:0000030 name: reference batch g is_a: ID:0000007 ! reference batch created_by: abrooks creation_date: 2011-12-30T02:01:54Z [Term] id: ID:0000031 name: reference batch h1 is_a: ID:0000007 ! reference batch created_by: abrooks creation_date: 2011-12-30T02:01:54Z [Term] id: ID:0000032 name: tg.oe is_a: ID:0000003 ! over expression created_by: abrooks creation_date: 2011-12-30T02:03:13Z [Term] id: ID:0000033 name: tf.oe is_a: ID:0000003 ! over expression created_by: abrooks creation_date: 2011-12-30T02:03:13Z [Term] id: ID:0000034 name: gfp.oe is_a: ID:0000003 ! over expression created_by: abrooks creation_date: 2011-12-30T02:03:13Z [Term] id: ID:0000035 name: promoter is_a: ID:0000001 ! genetic state created_by: abrooks creation_date: 2011-12-30T02:03:27Z [Term] id: ID:0000036 name: chemostat is_a: ID:0000011 ! culturing method created_by: abrooks creation_date: 2011-12-30T02:04:18Z [Term] id: ID:0000037 name: batch culturing is_a: ID:0000011 ! culturing method created_by: abrooks creation_date: 2011-12-30T02:04:18Z [Term] id: ID:0000038 name: environmental state is_a: ID:0000000 ! environmental state created_by: abrooks creation_date: 2011-12-30T02:05:19Z [Term] id: ID:0000039 name: circadian is_a: ID:0000038 ! environmental state created_by: abrooks creation_date: 2011-12-30T02:05:46Z [Term] id: ID:0000040 name: medium atp level def: "1.0 > atp (mol/L) < 1.5." [] is_a: ID:0000052 ! atp level created_by: abrooks creation_date: 2012-01-03T10:00:47Z [Term] id: ID:0000041 name: high atp level def: "atp (mol/L) > 1.5." [] is_a: ID:0000052 ! atp level created_by: abrooks creation_date: 2012-01-03T10:00:47Z [Term] id: ID:0000042 name: doubling time is_a: ID:0000004 ! cellular state created_by: abrooks creation_date: 2011-12-30T02:08:16Z [Term] id: ID:0000043 name: fast doubling def: "<= 6 hrs." [] is_a: ID:0000042 ! doubling time created_by: abrooks creation_date: 2011-12-30T02:09:05Z [Term] id: ID:0000044 name: normal doubling def: "6hr > doubling < 8hr." [] is_a: ID:0000042 ! doubling time created_by: abrooks creation_date: 2011-12-30T02:09:05Z [Term] id: ID:0000045 name: slow doubling def: ">= 8 hrs." [] is_a: ID:0000042 ! doubling time created_by: abrooks creation_date: 2011-12-30T02:09:05Z [Term] id: ID:0000046 name: shaking is_a: ID:0000006 ! experimental state created_by: abrooks creation_date: 2011-12-30T02:10:39Z [Term] id: ID:0000047 name: chemical perturbation is_a: ID:0000005 ! environmental perturbation created_by: abrooks creation_date: 2011-12-30T02:11:57Z [Term] id: ID:0000048 name: metal perturbation is_a: ID:0000005 ! environmental perturbation created_by: abrooks creation_date: 2011-12-30T02:11:57Z [Term] id: ID:0000049 name: nutrient perturbation is_a: ID:0000005 ! environmental perturbation created_by: abrooks creation_date: 2011-12-30T02:11:57Z [Term] id: ID:0000050 name: other is_a: ID:0000005 ! environmental perturbation created_by: abrooks creation_date: 2011-12-30T02:11:57Z [Term] id: ID:0000051 name: metabolite levels is_a: ID:0000004 ! cellular state created_by: abrooks creation_date: 2011-12-30T02:14:58Z [Term] id: ID:0000052 name: atp level is_a: ID:0000051 ! metabolite levels created_by: abrooks creation_date: 2011-12-30T02:15:21Z [Term] id: ID:0000053 name: glucose perturbation def: "7% wv." [] is_a: ID:0000049 ! nutrient perturbation created_by: abrooks creation_date: 2011-12-30T02:16:10Z [Term] id: ID:0000054 name: cobalt is_a: ID:0000048 ! metal perturbation created_by: abrooks creation_date: 2011-12-30T02:17:06Z [Term] id: ID:0000055 name: copper is_a: ID:0000048 ! metal perturbation created_by: abrooks creation_date: 2011-12-30T02:17:06Z [Term] id: ID:0000056 name: edta def: "1e-3 mol/L." [] is_a: ID:0000066 ! metal chelation created_by: abrooks creation_date: 2011-12-30T02:17:06Z [Term] id: ID:0000057 name: light state is_a: ID:0000005 ! environmental perturbation created_by: abrooks creation_date: 2011-12-30T02:17:11Z [Term] id: ID:0000058 name: media is_a: ID:0000038 ! environmental state created_by: abrooks creation_date: 2011-12-30T02:24:10Z [Term] id: ID:0000059 name: CM is_a: ID:0000058 ! media created_by: abrooks creation_date: 2011-12-30T02:24:48Z [Term] id: ID:0000060 name: MM1 is_a: ID:0000058 ! media created_by: abrooks creation_date: 2011-12-30T02:25:13Z [Term] id: ID:0000061 name: CDM is_a: ID:0000058 ! media created_by: abrooks creation_date: 2011-12-30T02:25:32Z [Term] id: ID:0000062 name: AKS CDM is_a: ID:0000061 ! CDM created_by: abrooks creation_date: 2011-12-30T02:27:10Z [Term] id: ID:0000063 name: FYL CDM is_a: ID:0000061 ! CDM created_by: abrooks creation_date: 2011-12-30T02:27:10Z [Term] id: ID:0000064 name: zinc is_a: ID:0000048 ! metal perturbation created_by: abrooks creation_date: 2011-12-30T02:27:23Z [Term] id: ID:0000065 name: dip is_a: ID:0000066 ! metal chelation created_by: abrooks creation_date: 2011-12-30T02:28:37Z [Term] id: ID:0000066 name: metal chelation is_a: ID:0000047 ! chemical perturbation is_a: ID:0000048 ! metal perturbation created_by: abrooks creation_date: 2011-12-30T02:28:53Z [Term] id: ID:0000067 name: mutagen is_a: ID:0000047 ! chemical perturbation created_by: abrooks creation_date: 2011-12-30T02:32:19Z [Term] id: ID:0000068 name: ems def: "0.1 mol/L." [] is_a: ID:0000067 ! mutagen created_by: abrooks creation_date: 2011-12-30T02:32:30Z [Term] id: ID:0000069 name: iron is_a: ID:0000048 ! metal perturbation created_by: abrooks creation_date: 2011-12-30T02:33:02Z [Term] id: ID:0000070 name: irradiation is_a: ID:0000057 ! light state created_by: abrooks creation_date: 2011-12-30T02:33:22Z [Term] id: ID:0000071 name: gamma def: "2500 gy." [] is_a: ID:0000070 ! irradiation created_by: abrooks creation_date: 2011-12-30T02:33:43Z [Term] id: ID:0000072 name: illumination state is_a: ID:0000039 ! circadian is_a: ID:0000057 ! light state created_by: abrooks creation_date: 2011-12-30T02:34:01Z [Term] id: ID:0000073 name: present illumination is_a: ID:0000072 ! illumination state created_by: abrooks creation_date: 2011-12-30T02:34:59Z [Term] id: ID:0000074 name: illumination history is_a: ID:0000072 ! illumination state created_by: abrooks creation_date: 2011-12-30T02:34:59Z [Term] id: ID:0000075 name: manganese def: "8e-4 mol/L" [] is_a: ID:0000048 ! metal perturbation created_by: abrooks creation_date: 2011-12-30T02:36:09Z [Term] id: ID:0000076 name: sodium chloride is_a: ID:0000038 ! environmental state created_by: abrooks creation_date: 2011-12-30T02:36:54Z [Term] id: ID:0000077 name: nickel is_a: ID:0000048 ! metal perturbation created_by: abrooks creation_date: 2011-12-30T02:37:23Z [Term] id: ID:0000078 name: pH is_a: ID:0000038 ! environmental state created_by: abrooks creation_date: 2011-12-30T02:38:33Z [Term] id: ID:0000079 name: oxygen state is_a: ID:0000038 ! environmental state created_by: abrooks creation_date: 2011-12-30T02:38:56Z [Term] id: ID:0000080 name: oxygen shift is_a: ID:0000005 ! environmental perturbation is_a: ID:0000079 ! oxygen state created_by: abrooks creation_date: 2011-12-30T02:39:21Z [Term] id: ID:0000081 name: low2high is_a: ID:0000080 ! oxygen shift created_by: abrooks creation_date: 2011-12-30T02:39:37Z [Term] id: ID:0000082 name: high2low is_a: ID:0000080 ! oxygen shift created_by: abrooks creation_date: 2011-12-30T02:39:51Z [Term] id: ID:0000083 name: ros is_a: ID:0000047 ! chemical perturbation created_by: abrooks creation_date: 2011-12-30T02:41:30Z [Term] id: ID:0000084 name: paraquat is_a: ID:0000083 ! ros created_by: abrooks creation_date: 2011-12-30T02:41:42Z [Term] id: ID:0000085 name: uv def: "200 J/m2." [] is_a: ID:0000070 ! irradiation created_by: abrooks creation_date: 2011-12-30T02:42:52Z [Term] id: ID:0000086 name: trh7.ko def: "putative Lrp-like transcriptional regulator." [] synonym: "VNG1123G" RELATED [] is_a: ID:0000148 ! lrp family tf ko created_by: abrooks creation_date: 2012-01-12T07:29:08Z [Term] id: ID:0000087 name: copper sulfate heptahydrate is_obsolete: true created_by: abrooks creation_date: 2012-01-03T10:08:12Z [Term] id: ID:0000088 name: low copper def: "mol/L<1e-4." [] is_a: ID:0000055 ! copper created_by: abrooks creation_date: 2012-01-03T10:08:31Z [Term] id: ID:0000089 name: medium copper def: "1e-4>mol/L<0.8e-3." [] is_a: ID:0000055 ! copper created_by: abrooks creation_date: 2012-01-03T10:08:31Z [Term] id: ID:0000090 name: high copper def: "mol/L>0.8e-3." [] is_a: ID:0000055 ! copper created_by: abrooks creation_date: 2012-01-03T10:08:31Z [Term] id: ID:0000091 name: low dip def: "2.5e-5 mol/L." [] is_a: ID:0000065 ! dip created_by: abrooks creation_date: 2012-01-03T11:28:02Z [Term] id: ID:0000092 name: high dip def: "2.5e-4 mol/L." [] is_a: ID:0000065 ! dip created_by: abrooks creation_date: 2012-01-03T11:28:02Z [Term] id: ID:0000093 name: low iron def: "<4e-3 mol/L." [] is_a: ID:0000069 ! iron created_by: abrooks creation_date: 2012-01-03T01:11:27Z [Term] id: ID:0000094 name: high iron def: ">=4e-3 mol/L." [] is_a: ID:0000069 ! iron created_by: abrooks creation_date: 2012-01-03T01:11:27Z [Term] id: ID:0000095 name: h202 is_a: ID:0000083 ! ros created_by: abrooks creation_date: 2012-01-03T01:32:35Z [Term] id: ID:0000096 name: low h202 def: "2.5e-2 mol/L." [] is_a: ID:0000095 ! h202 created_by: abrooks creation_date: 2012-01-03T01:33:15Z [Term] id: ID:0000097 name: high h202 def: "5e-2 mol/L." [] is_a: ID:0000095 ! h202 created_by: abrooks creation_date: 2012-01-03T01:33:15Z [Term] id: ID:0000098 name: dark def: "= 0umol/m2/s." [] is_a: ID:0000073 ! present illumination created_by: abrooks creation_date: 2012-01-03T01:38:20Z [Term] id: ID:0000099 name: low light def: "0 < mol/m2/s < 100." [] is_a: ID:0000073 ! present illumination created_by: abrooks creation_date: 2012-01-03T01:38:20Z [Term] id: ID:0000100 name: high light def: "> 100 mol/m2/s." [] is_a: ID:0000073 ! present illumination created_by: abrooks creation_date: 2012-01-03T01:38:20Z [Term] id: ID:0000101 name: expects dark def: "= 50umol/m2/s." [] is_a: ID:0000074 ! illumination history created_by: abrooks creation_date: 2012-01-03T01:41:06Z [Term] id: ID:0000102 name: expects low light def: "0 < mol/m2/s < 100." [] is_a: ID:0000074 ! illumination history created_by: abrooks creation_date: 2012-01-03T01:41:35Z [Term] id: ID:0000103 name: expects high light def: "> 100 mol/m2/s." [] is_a: ID:0000074 ! illumination history created_by: abrooks creation_date: 2012-01-03T01:41:41Z [Term] id: ID:0000104 name: afsQ2.ko synonym: "VNG0716G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000105 name: ark.ko def: "Adaptive-response sensory-kinase." [] synonym: "VNG0916G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000106 name: asnC.ko def: "Transcription regulator" [] synonym: "VNG1377G" RELATED [] xref: XX: is_a: ID:0000148 ! lrp family tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000107 name: bat.ko def: "Bacterio-opsin activator." [] synonym: "VNG1464G" RELATED [] is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000108 name: boa1.ko def: "Bacterio-opsin activator-like protein, Contains in N-C order PAS/PAC-GAF-HTH domains." [] synonym: "VNG0160G" RELATED [] is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000109 name: boa4.ko def: "Bacterio-opsin activator-like protein" [] synonym: "VNG0996G" RELATED [] is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000110 name: bop.ko def: "Bacteriorhodopsin precursor (BR)." [] synonym: "VNG1467G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000111 name: cspD1.ko def: "Cold shock protein (putative regulator)." [] synonym: "VNG0101G" RELATED [] is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000112 name: gapB.ko def: "Sensory histidine protein kinase homolog." [] synonym: "VNG0095G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000113 name: hpyA.ko def: "Archaeal histone A1." [] synonym: "VNG0134G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000114 name: htlD.ko def: "Htr-like protein." [] synonym: "VNG5037G" RELATED [] synonym: "VNG6035G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000115 name: htr1.ko def: "Sensory rhodopsin I transducer (HTR-I) (Methyl-accepting phototaxis protein I) (MPP-I)." [] synonym: "VNG1659G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000116 name: htr2.ko def: "Sensory rhodopsin II transducer (HTR-II) (Methyl-accepting phototaxis protein II) (MPP-II)." [] synonym: "VNG1765G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000117 name: htr8.ko def: "Htr8 transducer." [] synonym: "VNG1523G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000118 name: idr1.ko def: "Iron-dependent repressor homolog." [] synonym: "VNG2579G" RELATED [] is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000119 name: idr2.ko def: "Iron-dependent repressor homolog." [] synonym: "VNG0835G" RELATED [] is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000120 name: kinA2.ko def: "Signal-transducing histidine kinase homolog." [] synonym: "VNG0736G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000121 name: phoR.ko def: "PhoR histidine kinase protein homolog." [] synonym: "VNG1175G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000122 name: phr1.ko def: "Photolyase/cryptochrome." [] synonym: "VNG1754G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000123 name: phr2.ko def: "Deoxyribodipyrimidine photolyase ." [] synonym: "VNG1335G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000124 name: sirR.ko def: "Transcription repressor." [] synonym: "VNG0536G" RELATED [] is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000125 name: sop2.ko def: "Sensory rhodopsin II (SR-II)." [] synonym: "VNG1764G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000126 name: tbpA.ko def: "transcription initiation factor IID." [] synonym: "VNG5039G" RELATED [] synonym: "VNG6037G" RELATED [] is_a: ID:0000146 ! basal tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000127 name: tbpC.ko def: "transcription initiation factor IID." [] synonym: "VNG5142G" RELATED [] synonym: "VNG6140G" RELATED [] is_a: ID:0000146 ! basal tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000128 name: tbpD.ko def: "TATA-box binding protein D." [] synonym: "" RELATED [] synonym: "VNG5163G" RELATED [] is_a: ID:0000146 ! basal tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000129 name: tfbA.ko def: "Transcription initiation factor IIB 1 (TFIIB 1)." [] synonym: "VNG2184G" RELATED [] is_a: ID:0000146 ! basal tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000130 name: tfbB.ko def: "Transcription initiation factor IIB 2 (TFIIB 2)." [] synonym: "VNG0734G" RELATED [] is_a: ID:0000146 ! basal tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000131 name: tfbC.ko def: "Transcription initiation factor IIB 3 (TFIIB 3)." [] synonym: "VNG6351G" RELATED [] is_a: ID:0000146 ! basal tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000132 name: tfbD.ko def: "Transcription initiation factor IIB 4 (TFIIB 4)." [] synonym: "VNG0869G" RELATED [] is_a: ID:0000146 ! basal tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000133 name: tfbE.ko def: "Transcription initiation factor IIB 5 (TFIIB 5)." [] synonym: "VNG6389G" RELATED [] is_a: ID:0000146 ! basal tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000134 name: trh2.ko def: "Transcription regulator." [] synonym: "VNG1285G" RELATED [] is_a: ID:0000148 ! lrp family tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000135 name: trh3.ko def: "Transcription regulator." [] synonym: "VNG1816G" RELATED [] is_a: ID:0000148 ! lrp family tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000136 name: thr4.ko def: "Transcription regulator, PFAM1037:AsnC/Lrp family of transcription regulators\\nCOG1522:Transcription regulators (PET = 72)." [] synonym: "VNG2094G" RELATED [] is_a: ID:0000148 ! lrp family tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000137 name: trh6.ko def: "Transcription regulator." [] synonym: "VNG1351G" RELATED [] is_a: ID:0000148 ! lrp family tf ko created_by: abrooks creation_date: 2012-01-03T02:07:04Z [Term] id: ID:0000138 name: low salt def: "200 g/L NaCl." [] is_a: ID:0000076 ! sodium chloride created_by: abrooks creation_date: 2012-01-03T02:40:33Z [Term] id: ID:0000139 name: troR.ko def: "Iron-dependent repressor." [] synonym: "VNG0530G" RELATED [] is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000140 name: VNG0258H.ko def: "putative transcription regulator (PadR family)." [] is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000141 name: VNG1179C.ko def: "putative Lrp-like transcription regulator (AsnC family) ." [] is_a: ID:0000148 ! lrp family tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000142 name: VNG1237C.ko def: "putative Lrp-like transcription regulator (AsnC family) ." [] is_a: ID:0000148 ! lrp family tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000143 name: VNG1451C.ko def: "putative sugar-specific transcription regulator." [] is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000144 name: yvgX.ko def: "Copper (Cu) transporting P1-type ATPase." [] synonym: "VNG0700G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000145 name: zntA.ko def: "P1-type ATPase with broad specificity for Co, Ni, Cu, and Zn." [] synonym: "VNG0149G" RELATED [] is_a: ID:0000021 ! tg ko created_by: abrooks creation_date: 2012-01-03T01:49:26Z [Term] id: ID:0000146 name: basal tf ko is_a: ID:0000020 ! tf ko created_by: abrooks creation_date: 2012-01-03T01:58:47Z [Term] id: ID:0000147 name: accessory tf ko is_a: ID:0000020 ! tf ko created_by: abrooks creation_date: 2012-01-03T01:59:09Z [Term] id: ID:0000148 name: lrp family tf ko is_a: ID:0000147 ! accessory tf ko created_by: abrooks creation_date: 2012-01-03T02:00:02Z [Term] id: ID:0000149 name: normal salt def: "250 g/L NaCl." [] is_a: ID:0000076 ! sodium chloride created_by: abrooks creation_date: 2012-01-03T02:40:52Z [Term] id: ID:0000150 name: low nickel def: "5e-4 mol/L" [] is_a: ID:0000077 ! nickel created_by: abrooks creation_date: 2012-01-03T02:41:53Z [Term] id: ID:0000151 name: high nickel def: "1.5e-3 mol/L." [] is_a: ID:0000077 ! nickel created_by: abrooks creation_date: 2012-01-03T02:41:53Z [Term] id: ID:0000152 name: medium nickel def: "7.5e-4 mol/L." [] is_a: ID:0000077 ! nickel created_by: abrooks creation_date: 2012-01-03T02:42:38Z [Term] id: ID:0000153 name: cspD1.oe def: "Cold shock protein (putative regulator)." [] synonym: "VNG0101G" RELATED [] xref: XX: is_a: ID:0000156 ! accessory tf oe created_by: abrooks creation_date: 2012-01-03T02:44:24Z [Term] id: ID:0000154 name: cspD2.oe def: "Cold shock protein" [] synonym: "VNG1836G" RELATED [] is_a: ID:0000032 ! tg.oe created_by: abrooks creation_date: 2012-01-03T02:49:56Z [Term] id: ID:0000155 name: basal tf oe is_a: ID:0000033 ! tf.oe created_by: abrooks creation_date: 2012-01-03T02:53:28Z [Term] id: ID:0000156 name: accessory tf oe is_a: ID:0000033 ! tf.oe created_by: abrooks creation_date: 2012-01-03T02:53:28Z [Term] id: ID:0000157 name: tbpA.oe def: "transcription initiation factor IID." [] synonym: "VNG5039G" RELATED [] synonym: "VNG6037" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000158 name: tbpB.oe def: "transcription initiation factor IID." [] synonym: "VNG5052G" RELATED [] synonym: "VNG6050G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000159 name: tbpC.oe def: "transcription initiation factor IID." [] synonym: "VNG5142G" RELATED [] synonym: "VNG6140G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000160 name: tbpD.oe def: "TATA-box binding protein D" [] synonym: "VNG5163G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000161 name: tbpE.oe def: "TATA-box binding protein E (TATA-box factor E) (TATA sequence-binding protein E) (TBP E) (Box A binding protein E) (BAP E)." [] synonym: "VNG2243G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000162 name: tbpF.oe def: "TATA-box binding protein F (TATA-box factor F) (TATA sequence-binding protein F) (TBP F) (Box A binding protein F) (BAP F)" [] synonym: "VNG6438G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000163 name: tfbA.oe def: "Transcription initiation factor IIB 1 (TFIIB 1)." [] synonym: "VNG2184G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000164 name: tfbB.oe def: "Transcription initiation factor IIB 2 (TFIIB 2)." [] synonym: "VNG0734G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000165 name: tfbC.oe def: "Transcription initiation factor IIB 3 (TFIIB 3)." [] synonym: "VNG6351G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000166 name: tfbD.oe def: "Transcription initiation factor IIB 4 (TFIIB 4)." [] synonym: "VNG0869G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000167 name: tfbE.oe def: "Transcription initiation factor IIB 5 (TFIIB 5)." [] synonym: "VNG6389G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000168 name: tfbF.oe def: "Transcription initiation factor IIB 6 (TFIIB 6)." [] synonym: "VNG0315G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000169 name: tfbG.oe def: "Transcription initiation factor IIB 7 (TFIIB 7)" [] synonym: "VNG0254G" RELATED [] is_a: ID:0000155 ! basal tf oe created_by: abrooks creation_date: 2012-01-03T02:55:41Z [Term] id: ID:0000170 name: oxygen level is_a: ID:0000079 ! oxygen state created_by: abrooks creation_date: 2012-01-03T03:04:24Z [Term] id: ID:0000171 name: low oxygen def: "< 25 pct." [] is_a: ID:0000170 ! oxygen level created_by: abrooks creation_date: 2012-01-03T03:05:02Z [Term] id: ID:0000172 name: medium-low oxygen def: "25 < pct < 50." [] is_a: ID:0000170 ! oxygen level created_by: abrooks creation_date: 2012-01-03T03:05:02Z [Term] id: ID:0000173 name: medium-high oxygen def: "50 < pct < 75." [] is_a: ID:0000170 ! oxygen level created_by: abrooks creation_date: 2012-01-03T03:05:02Z [Term] id: ID:0000174 name: high oxygen def: ">75 pct" [] is_a: ID:0000170 ! oxygen level created_by: abrooks creation_date: 2012-01-03T03:05:02Z [Term] id: ID:0000175 name: low paraquat def: "2.5e-4 mol/L." [] is_a: ID:0000084 ! paraquat created_by: abrooks creation_date: 2012-01-03T03:07:57Z [Term] id: ID:0000176 name: high paraquat def: "4e-3 mol/L." [] is_a: ID:0000084 ! paraquat created_by: abrooks creation_date: 2012-01-03T03:07:57Z [Term] id: ID:0000177 name: pH < 7 is_a: ID:0000078 ! pH created_by: abrooks creation_date: 2012-01-03T03:09:19Z [Term] id: ID:0000178 name: pH >= 7 is_a: ID:0000078 ! pH created_by: abrooks creation_date: 2012-01-03T03:09:36Z [Term] id: ID:0000179 name: slow shaking def: "< 100 rpm." [] is_a: ID:0000046 ! shaking created_by: abrooks creation_date: 2012-01-03T03:11:52Z [Term] id: ID:0000180 name: normal shaking def: "100 <= rpm < 300." [] is_a: ID:0000046 ! shaking created_by: abrooks creation_date: 2012-01-03T03:11:52Z [Term] id: ID:0000181 name: fast shaking def: "> 300 rpm." [] is_a: ID:0000046 ! shaking created_by: abrooks creation_date: 2012-01-03T03:11:52Z [Term] id: ID:0000182 name: low zinc def: "<=.1e-5 mol/L zinc." [] is_a: ID:0000064 ! zinc created_by: abrooks creation_date: 2012-01-03T03:55:47Z [Term] id: ID:0000183 name: medium zinc def: "1.5e-5 2 mol/L." [] is_a: ID:0000064 ! zinc created_by: abrooks creation_date: 2012-01-03T03:55:47Z [Term] id: ID:0000185 name: temperature is_a: ID:0000038 ! environmental state created_by: abrooks creation_date: 2012-01-03T03:57:59Z [Term] id: ID:0000186 name: normal temperature def: "30 < C < 40." [] is_a: ID:0000185 ! temperature created_by: abrooks creation_date: 2012-01-03T03:58:25Z [Term] id: ID:0000187 name: low temperature def: "<= 30C." [] is_a: ID:0000185 ! temperature created_by: abrooks creation_date: 2012-01-03T03:58:31Z [Term] id: ID:0000188 name: high temperature def: "> 40 C" [] is_a: ID:0000185 ! temperature created_by: abrooks creation_date: 2012-01-03T04:00:04Z [Term] id: ID:0000189 name: low cobalt def: "2e-4." [] is_a: ID:0000054 ! cobalt created_by: abrooks creation_date: 2012-01-12T03:09:16Z [Term] id: ID:0000190 name: medium cobalt def: "3e-4." [] is_a: ID:0000054 ! cobalt created_by: abrooks creation_date: 2012-01-12T03:10:16Z [Term] id: ID:0000191 name: high cobalt def: "5e-4." [] is_a: ID:0000054 ! cobalt created_by: abrooks creation_date: 2012-01-12T03:10:16Z [Term] id: ID:0000192 name: low manganese def: "8.0e-4 mol/L." [] is_a: ID:0000075 ! manganese created_by: abrooks creation_date: 2012-01-12T07:43:08Z [Term] id: ID:0000193 name: medium manganese def: "1.0e-3 mol/L." [] is_a: ID:0000075 ! manganese created_by: abrooks creation_date: 2012-01-12T07:43:08Z [Term] id: ID:0000194 name: high manganese def: "1.5e-3 mol/L." [] is_a: ID:0000075 ! manganese created_by: abrooks creation_date: 2012-01-12T07:43:08Z [Term] id: ID:0000195 name: medium dip def: "1e-4mol/L." [] is_a: ID:0000065 ! dip created_by: abrooks creation_date: 2012-01-13T11:53:28Z [Term] id: ID:0000196 name: high oxygen shift is_a: ID:0000080 ! oxygen shift created_by: abrooks creation_date: 2012-01-13T02:29:52Z [Term] id: ID:0000197 name: low oxygen shift is_a: ID:0000080 ! oxygen shift created_by: abrooks creation_date: 2012-01-13T02:29:52Z