eco_29950 Co-expression

Genes in eco_29950

Organism Gene name Common name Accession Description Start Stop Strand Chromosome
Escherichia coli K-12 MG1655 b1217 chaB NP_415735.1 cation transport regulator 1271342 1271572 + NC_000913.2
Escherichia coli K-12 MG1655 b1431 ydcL NP_415948.1 predicted lipoprotein 1500481 1501149 + NC_000913.2
Escherichia coli K-12 MG1655 b1810 yoaC NP_416324.2 predicted protein 1892157 1892456 + NC_000913.2
Escherichia coli K-12 MG1655 b1837 yebW NP_416351.2 orf, hypothetical protein 1920145 1920336 + NC_000913.2
Escherichia coli K-12 MG1655 b2135 yohC NP_416639.2 orf, hypothetical protein 2223653 2223066 - NC_000913.2
Escherichia coli K-12 MG1655 b2136 yohD NP_416640.2 orf, hypothetical protein 2223823 2224401 + NC_000913.2
Escherichia coli K-12 MG1655 b3000 0 0 + NC_000913.2
Escherichia coli K-12 MG1655 b3448 yhhA NP_417905.1 hypothetical protein 3584966 3585406 + NC_000913.2
Escherichia coli K-12 MG1655 b3548 yhjY NP_418004.4 putative lipase 3710957 3710259 - NC_000913.2
Escherichia coli K-12 MG1655 b4107 phnB NP_418531.1 hypothetical protein 4323764 4323321 - NC_000913.2
Escherichia coli K-12 MG1655 b4263 yjgR NP_418684.1 predicted ATPase 4488086 4486584 - NC_000913.2

Conditions in eco_29950

Condition ID Condition Name
eco_108 GSM1373
eco_111 GSM18235
eco_119 GSM18262
eco_123 GSM18279
eco_124 GSM18285
eco_125 GSM30815
eco_129 GSM35417
eco_130 GSM37067
eco_135 GSM37886
eco_142 GSM63892
eco_152 GSM73125
eco_163 GSM73155
eco_168 GSM73257
eco_17 Clean_DIAUX13
eco_187 GSM7886
eco_19 Clean_DIAUX7
eco_197 GSM82616
eco_199 GSM83058
eco_207 GSM83080
eco_223 GSM99113
eco_233 GSM99150
eco_245 GSM99196
eco_274 Clean_H2O26
eco_279 EC_GLY_GLY2_20_C
eco_283 EC_GLY_GLYE_44_B
eco_308 GSM101777
eco_311 GSM106340
eco_319 GSM116025
eco_321 GSM118611
eco_325 GSM118621
eco_334 GSM18266
eco_354 GSM73147
eco_367 GSM8117
eco_369 GSM82543
eco_373 GSM82598
eco_374 GSM82604
eco_379 GSM83073
eco_382 GSM83083
eco_394 GSM99125
eco_404 GSM99183
eco_405 GSM99187
eco_409 GSM99200
eco_411 GSM99208
eco_413 GSM99391
eco_417 14829
eco_43 EC_GLY_WILD_D
eco_434 EC_LAC_LA_60_B
eco_444 GSM101767
eco_445 GSM101768
eco_453 GSM114385
eco_46 EC_LAC_L2_60_C
eco_470 GSM38548
eco_474 GSM65594
eco_48 EC_LAC_LA_60_A
eco_481 GSM73119
eco_482 GSM73123
eco_486 GSM73261
eco_495 GSM8111
eco_496 GSM82600
eco_498 GSM82610
eco_505 GSM99083
eco_507 GSM99088
eco_512 GSM99131
eco_518 GSM99188
eco_523 GSM99389
eco_527 wt
eco_529 1292
eco_536 Clean_H2O25
eco_539 crpcysB__G
eco_540 crpfruR__G
eco_543 EC_GLY_GLY1_20_B
eco_544 EC_GLY_GLY2_44_A
eco_545 EC_GLY_GLYD_44_A
eco_548 EC_GLY_GLYE_44_C
eco_562 GADXW_exp12
eco_564 GSM101780
eco_575 GSM18253
eco_58 EC_LAC_WILD_F
eco_585 GSM73132
eco_595 GSM83070
eco_6 1914
eco_60 E-MEXP-222-raw-data-386284973.txt
eco_614 GSM99210
eco_619 1909
eco_636 EC_LAC_L3_60_B
eco_657 GSM30818
eco_659 GSM37066
eco_669 GSM67665
eco_684 GSM83067
eco_69 fur__G
eco_708 Clean_ANA9
eco_715 E-MEXP-245-raw-data-396455397.txt
eco_716 GADXW_exp2
eco_733 GSM73142
eco_736 GSM77346
eco_750 GSM99178
eco_754 Clean_ANA17
eco_757 EC_GLY_GLYC_44_B
eco_760 EC_LAC_LD_60_B
eco_769 GSM18282
eco_790 GSM101774
eco_795 GSM18246
eco_802 GSM82620
eco_829 GSM67663
eco_83 GSM106341
eco_84 GSM106757
eco_844 GSM99214
eco_845 GSM118604
eco_851 GSM99112
eco_862 GSM99386
eco_863 GSM73118

De novo detected cis-regulatory motifs

CRM ID eval PSSM
eco_29950_2 0.6700
eco_29950_3 100.0000
eco_29950_1 0.0680

GREs assigned to eco_29950

GRE ID PSSM
eco_0
eco_0
eco_65

Corems associated with eco_29950

Corem
ec522655
ec522658
ec522662
ec524226
ec575306