eco_39746 Co-expression

Genes in eco_39746

Organism Gene name Common name Accession Description Start Stop Strand Chromosome
Escherichia coli K-12 MG1655 b1045 ymdB NP_415563.1 hypothetical protein 1105043 1105576 + NC_000913.2
Escherichia coli K-12 MG1655 b1100 ycfH NP_415618.1 predicted metallodependent hydrolase 1156000 1156797 + NC_000913.2
Escherichia coli K-12 MG1655 b1267 yciO NP_415783.6 orf, hypothetical protein 1322122 1322742 + NC_000913.2
Escherichia coli K-12 MG1655 b1431 ydcL NP_415948.1 predicted lipoprotein 1500481 1501149 + NC_000913.2
Escherichia coli K-12 MG1655 b1647 ydhF YP_025305.1 predicted oxidoreductase 1723656 1722760 - NC_000913.2
Escherichia coli K-12 MG1655 b1927 amyA NP_416437.1 cytoplasmic alpha-amylase 2004180 2005667 + NC_000913.2
Escherichia coli K-12 MG1655 b2015 yeeY NP_416519.4 putative transcriptional regulator LYSR-type 2086282 2085353 - NC_000913.2
Escherichia coli K-12 MG1655 b2135 yohC NP_416639.2 orf, hypothetical protein 2223653 2223066 - NC_000913.2
Escherichia coli K-12 MG1655 b2136 yohD NP_416640.2 orf, hypothetical protein 2223823 2224401 + NC_000913.2
Escherichia coli K-12 MG1655 b2535 csiE NP_417030.2 orf, hypothetical protein 2663457 2664737 + NC_000913.2
Escherichia coli K-12 MG1655 b2638 yfjU CP4-57 prophage; conserved protein 2770176 2770024 - NC_000913.2
Escherichia coli K-12 MG1655 b2889 idi NP_417365.1 isopentenyl-diphosphate delta-isomerase 3031087 3031635 + NC_000913.2
Escherichia coli K-12 MG1655 b3221 yhcH NP_417688.1 hypothetical protein 3367500 3367036 - NC_000913.2

Conditions in eco_39746

Condition ID Condition Name
eco_104 GSM120192
eco_107 GSM137283
eco_115 GSM18255
eco_124 GSM18285
eco_126 GSM30817
eco_132 GSM37071
eco_133 GSM37075
eco_135 GSM37886
eco_140 GSM63887
eco_153 GSM73130
eco_16 Clean_DIAUX12
eco_161 GSM73151
eco_167 GSM73160
eco_169 GSM73258
eco_171 GSM73264
eco_175 GSM73272
eco_177 GSM73277
eco_181 GSM77341
eco_189 GSM8119
eco_203 GSM83069
eco_206 GSM83078
eco_214 GSM98727
eco_218 GSM99096
eco_22 Clean_H2O22
eco_221 GSM99108
eco_226 GSM99121
eco_228 GSM99128
eco_230 GSM99132
eco_231 GSM99133
eco_235 GSM99159
eco_247 GSM99203
eco_249 GSM99211
eco_250 GSM99215
eco_256 GSM99401
eco_258 1277
eco_267 5278
eco_273 Clean_H2O23
eco_284 EC_LAC_LA_20_B
eco_285 EC_LAC_LA_20_C
eco_289 EC_LAC_LE_20_B
eco_296 E-MEXP-267-raw-data-495080351.txt
eco_301 GADXW_exp9
eco_309 GSM101779
eco_32 EC_GLY_GLY1_44_A
eco_347 GSM65624
eco_359 GSM73269
eco_36 EC_GLY_GLYA_20_C
eco_361 GSM73281
eco_364 GSM77360
eco_365 GSM8113
eco_379 GSM83073
eco_383 GSM88912
eco_400 GSM99157
eco_404 GSM99183
eco_407 GSM99193
eco_415 GSM99400
eco_418 14831
eco_43 EC_GLY_WILD_D
eco_435 EC_LAC_LC_20_C
eco_44 EC_LAC_L2_20_C
eco_442 GADXW_exp15
eco_444 GSM101767
eco_456 GSM118622
eco_459 GSM18237
eco_46 EC_LAC_L2_60_C
eco_472 GSM63896
eco_481 GSM73119
eco_486 GSM73261
eco_489 GSM73282
eco_491 GSM77344
eco_493 GSM77350
eco_496 GSM82600
eco_505 GSM99083
eco_506 GSM99086
eco_510 GSM99102
eco_513 GSM99134
eco_545 EC_GLY_GLYD_44_A
eco_547 EC_GLY_GLYE_20_B
eco_550 EC_LAC_L2_60_A
eco_553 EC_LAC_LC_20_B
eco_561 E-MEXP-267-raw-data-495080319.txt
eco_568 GSM118602
eco_57 EC_LAC_WILD_E
eco_574 GSM1375
eco_577 GSM18287
eco_578 GSM18288
eco_583 GSM63894
eco_585 GSM73132
eco_593 GSM83061
eco_6 1914
eco_600 GSM98719
eco_604 GSM99123
eco_606 GSM99137
eco_626 EC_GLY_GLY2_20_B
eco_629 EC_GLY_GLYC_20_A
eco_634 EC_LAC_L2_20_A
eco_636 EC_LAC_L3_60_B
eco_64 E-MEXP-245-raw-data-396455333.txt
eco_643 GSM101766
eco_644 GSM101776
eco_653 GSM18274
eco_675 GSM73274
eco_679 GSM8112
eco_683 GSM83063
eco_685 GSM83068
eco_686 GSM83072
eco_689 GSM98729
eco_69 fur__G
eco_691 GSM99094
eco_705 GSM99397
eco_706 1912
eco_721 GSM18265
eco_734 GSM73252
eco_740 GSM89485
eco_755 Clean_DIAUX2
eco_758 EC_GLY_GLYD_44_C
eco_760 EC_LAC_LD_60_B
eco_767 GSM18254
eco_775 GSM73289
eco_783 Clean_DIAUX8
eco_794 GSM118601
eco_798 GSM73253
eco_80 GSM101772
eco_803 GSM98724
eco_81 GSM101773
eco_817 GSM18277
eco_818 GSM73129
eco_837 E-MEXP-267-raw-data-495080287.txt
eco_841 GSM37076
eco_842 GSM65639
eco_846 GSM18248
eco_853 GSM73128
eco_855 GSM99161
eco_856 Clean_ANA20
eco_858 GSM118609
eco_859 GSM18280
eco_861 GSM99124
eco_95 GSM116024
eco_96 GSM116026

De novo detected cis-regulatory motifs

CRM ID eval PSSM
eco_39746_2 28.0000
eco_39746_1 2.2000

GREs assigned to eco_39746

GRE ID PSSM
eco_0
eco_65

Corems associated with eco_39746

Corem
ec522658
ec613265