Supplementary Information
Supplementary Datasets
| # | Description | Link |
|---|---|---|
| Dataset S1 | H. salinarum GREs | download |
| Dataset S2 | E. coli GREs, including matches to experimentally characterized motifs (RegulonDB) | download |
| Dataset S3 | E. coli network performance statistics | download |
| Dataset S4 | E. coli global fitness statistics | download |
| Dataset S5 | E. coli fitness correlated gene pairs spanning multiple regulons, modeled by corems | download |
| Dataset S6 | Predicted and validated operons with multiple condition-specific isoforms: H. salinarum and E. coli | download |
| Dataset S7 | H. salinarum, dpp operon corems, GRE locations | download |
| Dataset S8 | E. coli, nucleotide corems, GRE locations | download |
| Dataset S9 | E. coli multiple regulatory mechanisms coordinate single corem, ec512157 | download |
Supplemental Data
Expression Data
- Tab delimited Halobacterium salinarum NRC-1 expression data set: 2,400 genes x 1,495 arrays. Download
- Escherichia coli K-12 expression data available through DISTILLER website
Environmental Ontology
- Full Halobacterium salinarum NRC-1 environmental ontology, .obo flat file. Requires OBO-edit to view. Download
- Halobacterium salinarum NRC-1 array annotations used to construct the ontology. Download
Additional Data and Tables
| Description | Formatted | Unformatted |
|---|---|---|
| Array annotations for H. salinarum | download | download |
| H. salinarum environmental ontology: array to ids | download | download |
| H. salinarum conditional operons | download | download |
| E. coli conditional operons | download | download |
| Corem membership: H. salinarum, Gene2Corem | download | download |
| Corem membership: H. salinarum, Corem2Gene | download | download |
| Corem membership: E. coli, Gene2Corem | download | download |
| Corem membership: E. coli, Corem2Gene | download | download |